Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | ABNR97_RS03285 | Genome accession | NZ_OZ021676 |
| Coordinates | 639165..639830 (-) | Length | 221 a.a. |
| NCBI ID | WP_047918678.1 | Uniprot ID | - |
| Organism | Neisseria gonorrhoeae isolate SGC-23-001 | ||
| Function | type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 584405..649682 | 639165..639830 | within | 0 |
Gene organization within MGE regions
Location: 584405..649682
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABNR97_RS02895 | - | 584405..585058 (-) | 654 | WP_162855545.1 | IS1595 family transposase | - |
| ABNR97_RS02900 | purM | 586056..587090 (-) | 1035 | WP_003692893.1 | phosphoribosylformylglycinamidine cyclo-ligase | - |
| ABNR97_RS02905 | - | 587331..587519 (+) | 189 | WP_003689039.1 | hypothetical protein | - |
| ABNR97_RS02910 | - | 587779..588768 (+) | 990 | WP_003689040.1 | site-specific integrase | - |
| ABNR97_RS02915 | - | 589110..589589 (+) | 480 | WP_002241413.1 | DUF4760 domain-containing protein | - |
| ABNR97_RS02920 | - | 589649..592693 (-) | 3045 | WP_348676487.1 | tape measure protein | - |
| ABNR97_RS02925 | - | 592723..592872 (-) | 150 | WP_003691402.1 | hypothetical protein | - |
| ABNR97_RS02930 | - | 593341..593682 (-) | 342 | WP_003696082.1 | hypothetical protein | - |
| ABNR97_RS02935 | - | 593666..593824 (-) | 159 | WP_003691816.1 | hypothetical protein | - |
| ABNR97_RS02940 | - | 593824..594363 (-) | 540 | WP_050165526.1 | TIGR02594 family protein | - |
| ABNR97_RS02945 | - | 594405..594530 (-) | 126 | WP_255294325.1 | hypothetical protein | - |
| ABNR97_RS02950 | - | 594570..594806 (+) | 237 | WP_003689049.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| ABNR97_RS02955 | - | 594806..595153 (+) | 348 | WP_003689051.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| ABNR97_RS02960 | - | 595509..595841 (-) | 333 | WP_003691408.1 | hypothetical protein | - |
| ABNR97_RS02965 | - | 595842..596312 (-) | 471 | WP_003689057.1 | hypothetical protein | - |
| ABNR97_RS02970 | - | 596383..596688 (-) | 306 | WP_003689058.1 | hypothetical protein | - |
| ABNR97_RS02975 | - | 596800..600945 (-) | 4146 | WP_348676489.1 | phage tail protein | - |
| ABNR97_RS02980 | - | 601185..601463 (+) | 279 | WP_003692877.1 | helix-turn-helix domain-containing protein | - |
| ABNR97_RS02985 | - | 601491..601922 (-) | 432 | WP_003689064.1 | NlpC/P60 family protein | - |
| ABNR97_RS02990 | - | 601924..602778 (-) | 855 | WP_003698614.1 | DUF2163 domain-containing protein | - |
| ABNR97_RS02995 | - | 602775..603374 (-) | 600 | WP_003692874.1 | DUF2460 domain-containing protein | - |
| ABNR97_RS03000 | - | 603374..603640 (-) | 267 | WP_003689070.1 | hypothetical protein | - |
| ABNR97_RS03005 | - | 603652..603981 (-) | 330 | WP_003692871.1 | hypothetical protein | - |
| ABNR97_RS03010 | - | 604042..604815 (-) | 774 | WP_003691416.1 | hypothetical protein | - |
| ABNR97_RS03015 | - | 604841..605269 (-) | 429 | WP_003689076.1 | hypothetical protein | - |
| ABNR97_RS03020 | - | 605266..605748 (-) | 483 | WP_197097348.1 | HK97 gp10 family phage protein | - |
| ABNR97_RS03025 | - | 605748..606278 (-) | 531 | WP_003689080.1 | head-tail connector protein | - |
| ABNR97_RS03030 | - | 606281..606643 (-) | 363 | WP_003689082.1 | hypothetical protein | - |
| ABNR97_RS03035 | - | 606650..608149 (-) | 1500 | WP_348676490.1 | hypothetical protein | - |
| ABNR97_RS03040 | - | 608190..609347 (-) | 1158 | WP_010360058.1 | HK97 family phage prohead protease | - |
| ABNR97_RS03045 | - | 609415..611562 (-) | 2148 | WP_003691423.1 | phage portal protein | - |
| ABNR97_RS03050 | terL | 611559..612980 (-) | 1422 | WP_003697216.1 | phage terminase large subunit | - |
| ABNR97_RS03055 | - | 613042..613491 (-) | 450 | WP_003695485.1 | hypothetical protein | - |
| ABNR97_RS03060 | - | 613784..614611 (-) | 828 | WP_348676491.1 | KilA-N domain-containing protein | - |
| ABNR97_RS03065 | - | 614904..616064 (-) | 1161 | WP_348676492.1 | type I restriction endonuclease | - |
| ABNR97_RS03070 | - | 616155..616562 (-) | 408 | WP_003691430.1 | hypothetical protein | - |
| ABNR97_RS03075 | - | 616684..616812 (+) | 129 | WP_012503747.1 | hypothetical protein | - |
| ABNR97_RS03080 | - | 616829..617209 (-) | 381 | WP_225602695.1 | RusA family crossover junction endodeoxyribonuclease | - |
| ABNR97_RS03085 | - | 617200..617481 (-) | 282 | WP_003689109.1 | hypothetical protein | - |
| ABNR97_RS03090 | - | 617509..617658 (-) | 150 | WP_003689110.1 | hypothetical protein | - |
| ABNR97_RS03095 | - | 617835..618329 (-) | 495 | WP_003691434.1 | DUF3310 domain-containing protein | - |
| ABNR97_RS03100 | - | 618368..618574 (-) | 207 | WP_154235934.1 | hypothetical protein | - |
| ABNR97_RS03105 | - | 618668..620029 (-) | 1362 | WP_003689132.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| ABNR97_RS03110 | - | 620026..620529 (-) | 504 | WP_010360005.1 | hypothetical protein | - |
| ABNR97_RS03115 | - | 621074..621211 (-) | 138 | WP_010359998.1 | hypothetical protein | - |
| ABNR97_RS03120 | - | 621208..621435 (-) | 228 | WP_003698261.1 | helix-turn-helix domain-containing protein | - |
| ABNR97_RS03125 | - | 621608..621796 (+) | 189 | WP_003691445.1 | hypothetical protein | - |
| ABNR97_RS03130 | - | 621773..621928 (-) | 156 | WP_003689578.1 | hypothetical protein | - |
| ABNR97_RS03135 | - | 622008..622244 (-) | 237 | WP_003687971.1 | Cro/CI family transcriptional regulator | - |
| ABNR97_RS03140 | - | 622367..623029 (+) | 663 | WP_012503489.1 | LexA family transcriptional regulator | - |
| ABNR97_RS03145 | - | 623142..623579 (+) | 438 | WP_003687967.1 | hypothetical protein | - |
| ABNR97_RS03150 | - | 623596..624057 (+) | 462 | WP_003687965.1 | helix-turn-helix domain-containing protein | - |
| ABNR97_RS03155 | - | 624054..624467 (+) | 414 | WP_003687963.1 | hypothetical protein | - |
| ABNR97_RS03160 | - | 624665..624865 (+) | 201 | WP_047954343.1 | hypothetical protein | - |
| ABNR97_RS03165 | - | 624898..625374 (+) | 477 | WP_002255718.1 | DUF6948 domain-containing protein | - |
| ABNR97_RS03170 | - | 625371..625646 (+) | 276 | WP_103195391.1 | hypothetical protein | - |
| ABNR97_RS03175 | - | 625787..626119 (+) | 333 | WP_003687946.1 | hypothetical protein | - |
| ABNR97_RS03180 | - | 626272..626550 (+) | 279 | WP_003691529.1 | NGO1622 family putative holin | - |
| ABNR97_RS03185 | - | 626547..626708 (+) | 162 | WP_003693867.1 | hypothetical protein | - |
| ABNR97_RS03190 | - | 626777..627463 (+) | 687 | WP_050159915.1 | phage replication initiation protein, NGO0469 family | - |
| ABNR97_RS03195 | - | 627603..627785 (+) | 183 | WP_003691535.1 | hypothetical protein | - |
| ABNR97_RS03200 | - | 627782..628273 (+) | 492 | WP_003691537.1 | siphovirus Gp157 family protein | - |
| ABNR97_RS03205 | - | 628325..628540 (+) | 216 | WP_003691538.1 | hypothetical protein | - |
| ABNR97_RS03210 | - | 628651..628884 (+) | 234 | Protein_634 | hypothetical protein | - |
| ABNR97_RS03215 | - | 629198..629881 (+) | 684 | WP_003687929.1 | DUF2786 domain-containing protein | - |
| ABNR97_RS03220 | - | 630076..630345 (+) | 270 | WP_003687928.1 | hypothetical protein | - |
| ABNR97_RS03225 | - | 630701..631894 (-) | 1194 | WP_010359935.1 | phage integrase central domain-containing protein | - |
| ABNR97_RS03240 | yaaA | 632425..633204 (-) | 780 | WP_003706583.1 | peroxide stress protein YaaA | - |
| ABNR97_RS03245 | dapC | 633515..634702 (-) | 1188 | WP_047949582.1 | succinyldiaminopimelate transaminase | - |
| ABNR97_RS03250 | dut | 634780..635232 (-) | 453 | WP_103195211.1 | dUTP diphosphatase | - |
| ABNR97_RS03255 | - | 635398..636105 (+) | 708 | Protein_641 | AzlC family ABC transporter permease | - |
| ABNR97_RS03260 | - | 636102..636410 (+) | 309 | WP_010951048.1 | AzlD family protein | - |
| ABNR97_RS03265 | pilL | 636480..636953 (-) | 474 | WP_025455870.1 | PilX family type IV pilin | Machinery gene |
| ABNR97_RS03270 | pilK | 636955..637566 (-) | 612 | WP_003687918.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
| ABNR97_RS03275 | pilJ | 637545..638525 (-) | 981 | WP_010951046.1 | PilW family protein | Machinery gene |
| ABNR97_RS03280 | pilV | 638522..639133 (-) | 612 | WP_050169631.1 | type IV pilus modification protein PilV | Machinery gene |
| ABNR97_RS03285 | pilH | 639165..639830 (-) | 666 | WP_047918678.1 | Tfp pilus assembly protein FimT/FimU | Machinery gene |
| ABNR97_RS03290 | dnaB | 639985..641391 (-) | 1407 | WP_047917169.1 | replicative DNA helicase | - |
| ABNR97_RS03295 | - | 641555..642136 (+) | 582 | WP_047923823.1 | superoxide dismutase | - |
| ABNR97_RS03300 | - | 642368..642877 (-) | 510 | WP_003687909.1 | isoprenylcysteine carboxyl methyltransferase family protein | - |
| ABNR97_RS03305 | - | 643208..643540 (-) | 333 | WP_003687908.1 | hypothetical protein | - |
| ABNR97_RS03310 | cysT | 643726..644555 (+) | 830 | Protein_652 | sulfate ABC transporter permease subunit CysT | - |
| ABNR97_RS03315 | cysW | 644744..645565 (+) | 822 | WP_348676493.1 | sulfate ABC transporter permease subunit CysW | - |
| ABNR97_RS03320 | - | 645561..645668 (+) | 108 | Protein_654 | IS5/IS1182 family transposase | - |
| ABNR97_RS03325 | - | 645706..646782 (+) | 1077 | WP_003687905.1 | sulfate/molybdate ABC transporter ATP-binding protein | - |
| ABNR97_RS03330 | ilvA | 646838..648364 (-) | 1527 | WP_003690890.1 | threonine ammonia-lyase, biosynthetic | - |
| ABNR97_RS03335 | - | 648513..649682 (+) | 1170 | WP_003687902.1 | D-alanyl-D-alanine carboxypeptidase family protein | - |
Sequence
Protein
Download Length: 221 a.a. Molecular weight: 24613.96 Da Isoelectric Point: 8.6140
>NTDB_id=1162907 ABNR97_RS03285 WP_047918678.1 639165..639830(-) (pilH) [Neisseria gonorrhoeae isolate SGC-23-001]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQIANLLRFSRGEAVRLNLPVYICPAQVKKDGTVD
NQCDFGKKEQGMLAFGDKNDNKAYDGDAADVFLRNVVLNDDIKDKRINYTFNHIAFGSSQPTADRVVWTFNQNGTFGYTK
DQHLASTSSFFYSDGYIQIVLTDARAVSDADRKFRSAVVLIDSSGRVEVCRKNDTRAVCKH
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQIANLLRFSRGEAVRLNLPVYICPAQVKKDGTVD
NQCDFGKKEQGMLAFGDKNDNKAYDGDAADVFLRNVVLNDDIKDKRINYTFNHIAFGSSQPTADRVVWTFNQNGTFGYTK
DQHLASTSSFFYSDGYIQIVLTDARAVSDADRKFRSAVVLIDSSGRVEVCRKNDTRAVCKH
Nucleotide
Download Length: 666 bp
>NTDB_id=1162907 ABNR97_RS03285 WP_047918678.1 639165..639830(-) (pilH) [Neisseria gonorrhoeae isolate SGC-23-001]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTACGGTCGAC
AACCAATGCGACTTCGGTAAGAAGGAACAGGGGATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCTGCGGATGTTTTTCTCCGTAACGTGGTATTGAATGATGATATCAAGGATAAGCGGATTAATTACACCTTCAATCATA
TCGCTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATCTTGCAAGCACATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAGGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTACGGTCGAC
AACCAATGCGACTTCGGTAAGAAGGAACAGGGGATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCTGCGGATGTTTTTCTCCGTAACGTGGTATTGAATGATGATATCAAGGATAAGCGGATTAATTACACCTTCAATCATA
TCGCTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATCTTGCAAGCACATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAGGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Neisseria gonorrhoeae MS11 |
86.878 |
100 |
0.869 |