Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ABNR90_RS08960 Genome accession   NZ_OZ021673
Coordinates   1688682..1688894 (-) Length   70 a.a.
NCBI ID   WP_252295723.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae isolate SGC-23-002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1683682..1693894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNR90_RS08940 - 1683872..1684813 (-) 942 WP_003686969.1 ABC transporter ATP-binding protein -
  ABNR90_RS08945 - 1684822..1685697 (-) 876 WP_003686971.1 NUDIX hydrolase family protein -
  ABNR90_RS08955 thiC 1686295..1688196 (+) 1902 WP_149032452.1 phosphomethylpyrimidine synthase ThiC -
  ABNR90_RS08960 pilE 1688682..1688894 (-) 213 WP_252295723.1 pilin Machinery gene
  ABNR90_RS08965 - 1688907..1689181 (-) 275 Protein_1735 pilin -
  ABNR90_RS08970 - 1689208..1689522 (-) 315 Protein_1736 pilin -
  ABNR90_RS08975 - 1689513..1689815 (-) 303 Protein_1737 pilin -
  ABNR90_RS08980 - 1689866..1690243 (-) 378 Protein_1738 pilin -
  ABNR90_RS08985 - 1690683..1691036 (-) 354 Protein_1739 pilin -
  ABNR90_RS08990 - 1691076..1691419 (-) 344 Protein_1740 pilin -
  ABNR90_RS08995 - 1691423..1691731 (+) 309 Protein_1741 NAD(P)-dependent oxidoreductase -
  ABNR90_RS09000 metG 1691806..1693860 (-) 2055 WP_149032534.1 methionine--tRNA ligase -

Sequence

Protein


Download         Length: 70 a.a.        Molecular weight: 7750.63 Da        Isoelectric Point: 8.5308

>NTDB_id=1162881 ABNR90_RS08960 WP_252295723.1 1688682..1688894(-) (pilE) [Neisseria gonorrhoeae isolate SGC-23-002]
MNSSNVNKEIQGKKLSLWAKREDGSVKWFCGQPVKRTGDNDDTVADAKDGKEIDTKHLPSTCRDKASDAK

Nucleotide


Download         Length: 213 bp        

>NTDB_id=1162881 ABNR90_RS08960 WP_252295723.1 1688682..1688894(-) (pilE) [Neisseria gonorrhoeae isolate SGC-23-002]
ATGAATTCAAGCAACGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTGAAGACGGTTCGGTAAA
ATGGTTCTGCGGACAGCCGGTTAAGCGCACCGGCGACAACGACGACACCGTTGCCGACGCCAAAGACGGCAAAGAAATCG
ACACCAAGCACCTGCCGTCAACCTGCCGCGATAAGGCATCTGATGCCAAATGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(1-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

82.857

100

0.829
  pilE Neisseria gonorrhoeae strain FA1090

80.597

95.714

0.771

Multiple sequence alignment