Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABGT34_RS03195 Genome accession   NZ_OZ006997
Coordinates   678345..678938 (-) Length   197 a.a.
NCBI ID   WP_283599389.1    Uniprot ID   -
Organism   MAG: Ligilactobacillus aviarius isolate pooled_s2189.ctg002983c_hifiasm_circ MAG     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 670340..698931 678345..678938 within 0


Gene organization within MGE regions


Location: 670340..698931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGT34_RS03150 pstB 670340..671095 (-) 756 WP_346676927.1 phosphate ABC transporter ATP-binding protein PstB -
  ABGT34_RS03155 pstB 671109..671897 (-) 789 WP_346676929.1 phosphate ABC transporter ATP-binding protein PstB -
  ABGT34_RS03160 pstA 671897..672793 (-) 897 WP_278851498.1 phosphate ABC transporter permease PstA -
  ABGT34_RS03165 pstC 672793..673695 (-) 903 WP_283577756.1 phosphate ABC transporter permease subunit PstC -
  ABGT34_RS03170 - 673696..674565 (-) 870 WP_283599387.1 phosphate ABC transporter substrate-binding protein -
  ABGT34_RS03175 - 674775..675545 (+) 771 WP_346676932.1 response regulator transcription factor -
  ABGT34_RS03180 - 675595..675921 (-) 327 WP_064214738.1 heavy metal-binding domain-containing protein -
  ABGT34_RS03185 - 676379..677866 (-) 1488 WP_064214737.1 peptide MFS transporter -
  ABGT34_RS03190 rpsR 678087..678323 (-) 237 WP_057827196.1 30S ribosomal protein S18 -
  ABGT34_RS03195 ssb 678345..678938 (-) 594 WP_283599389.1 single-stranded DNA-binding protein Machinery gene
  ABGT34_RS03200 rpsF 678969..679259 (-) 291 WP_057827198.1 30S ribosomal protein S6 -
  ABGT34_RS03205 - 679510..680739 (+) 1230 WP_204778868.1 MFS transporter -
  ABGT34_RS03210 gyrA 680939..683524 (-) 2586 WP_346676935.1 DNA gyrase subunit A -
  ABGT34_RS03215 gyrB 683579..685540 (-) 1962 WP_057827201.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  ABGT34_RS03220 recF 685546..686727 (-) 1182 WP_204779684.1 DNA replication/repair protein RecF -
  ABGT34_RS03225 yaaA 686732..686950 (-) 219 WP_057827203.1 S4 domain-containing protein YaaA -
  ABGT34_RS03230 - 687165..688541 (-) 1377 WP_204779683.1 sugar porter family MFS transporter -
  ABGT34_RS03235 dnaN 688719..689858 (-) 1140 WP_278851513.1 DNA polymerase III subunit beta -
  ABGT34_RS03240 dnaA 690025..691413 (-) 1389 WP_346676937.1 chromosomal replication initiator protein DnaA -
  ABGT34_RS03245 rpmH 691925..692059 (+) 135 WP_057827207.1 50S ribosomal protein L34 -
  ABGT34_RS03250 rnpA 692131..692505 (+) 375 WP_064208311.1 ribonuclease P protein component -
  ABGT34_RS03255 - 692505..693350 (+) 846 WP_057827209.1 YidC/Oxa1 family membrane protein insertase -
  ABGT34_RS03260 - 693538..694731 (+) 1194 WP_283579796.1 acetate kinase -
  ABGT34_RS03265 - 694978..695199 (+) 222 WP_346676939.1 immunity protein -
  ABGT34_RS03270 - 695667..696449 (+) 783 WP_283577568.1 glycerophosphodiester phosphodiesterase family protein -
  ABGT34_RS03275 - 696505..696756 (-) 252 WP_057827213.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  ABGT34_RS03280 - 696792..697574 (-) 783 WP_204779710.1 hypothetical protein -
  ABGT34_RS03285 - 697710..698087 (+) 378 WP_278851520.1 DUF302 domain-containing protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21449.08 Da        Isoelectric Point: 4.3844

>NTDB_id=1162701 ABGT34_RS03195 WP_283599389.1 678345..678938(-) (ssb) [MAG: Ligilactobacillus aviarius isolate pooled_s2189.ctg002983c_hifiasm_circ MAG]
MINRVVLVGRLTKNPDLRYTQSGSAVASFTVAVERPFTNQNGDRDADFINCVMWRKAAENFANFTHKGSMVAVEGRLQTR
SYENQQGVRVYVTEVVVDNFSLLETKAQSEQYRREHPEEAQGQGAPMNNNSSFGNGNPFGNPNSSGNANQGGTFNGNVQT
GNLGSANDNNSQDASTNDDPFADNGNSIDISDDDLPF

Nucleotide


Download         Length: 594 bp        

>NTDB_id=1162701 ABGT34_RS03195 WP_283599389.1 678345..678938(-) (ssb) [MAG: Ligilactobacillus aviarius isolate pooled_s2189.ctg002983c_hifiasm_circ MAG]
GTGATTAATCGAGTAGTTCTCGTTGGTCGATTAACAAAGAATCCTGATTTACGTTACACCCAATCCGGCTCTGCGGTTGC
AAGCTTTACAGTTGCTGTTGAACGGCCGTTTACAAATCAAAATGGTGACCGGGATGCAGACTTTATTAACTGTGTAATGT
GGCGGAAAGCGGCTGAAAACTTTGCCAACTTCACCCACAAAGGTTCAATGGTGGCGGTTGAAGGTCGGCTTCAAACGCGT
TCATATGAAAACCAACAAGGAGTTCGGGTATACGTAACAGAAGTCGTTGTTGACAACTTCTCATTGTTGGAAACAAAGGC
TCAGTCAGAACAGTATCGCCGGGAACATCCCGAAGAAGCACAAGGTCAAGGCGCTCCGATGAATAATAATTCATCATTTG
GAAACGGAAATCCGTTTGGGAATCCAAATTCAAGTGGAAACGCAAACCAGGGTGGAACTTTCAATGGGAATGTCCAAACT
GGCAACTTAGGAAGCGCAAATGACAACAACAGTCAGGATGCTTCAACCAATGATGATCCATTTGCAGATAATGGAAACTC
AATTGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.406

100

0.604
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.761

100

0.508

Multiple sequence alignment