Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABGT69_RS05765 Genome accession   NZ_OZ006982
Coordinates   1141403..1141978 (-) Length   191 a.a.
NCBI ID   WP_003715685.1    Uniprot ID   -
Organism   MAG: Limosilactobacillus oris isolate metabat2_pooled_metaflye.974 MAG     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1136403..1146978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGT69_RS05740 dnaB 1136826..1138241 (-) 1416 WP_003712124.1 replicative DNA helicase -
  ABGT69_RS05745 rplI 1138274..1138726 (-) 453 WP_003712030.1 50S ribosomal protein L9 -
  ABGT69_RS05750 - 1138732..1140753 (-) 2022 WP_191363746.1 DHH family phosphoesterase -
  ABGT69_RS05755 - 1140878..1141060 (-) 183 WP_062813135.1 hypothetical protein -
  ABGT69_RS05760 rpsR 1141134..1141370 (-) 237 WP_003665240.1 30S ribosomal protein S18 -
  ABGT69_RS05765 ssb 1141403..1141978 (-) 576 WP_003715685.1 single-stranded DNA-binding protein Machinery gene
  ABGT69_RS05770 rpsF 1142014..1142310 (-) 297 WP_003712079.1 30S ribosomal protein S6 -
  ABGT69_RS05775 gyrA 1142504..1145038 (-) 2535 WP_062813136.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20883.52 Da        Isoelectric Point: 4.7278

>NTDB_id=1162681 ABGT69_RS05765 WP_003715685.1 1141403..1141978(-) (ssb) [MAG: Limosilactobacillus oris isolate metabat2_pooled_metaflye.974 MAG]
MINRAVLTGRLTRDPELRYTTSGTAVVSFTLAVDRQFRNQNGDRDADFVNCVIWRKSAENFSNFTHKGSLVGVEGRIQTR
NYENQQGNRVYVTEVVVDNFALLEPRQNGGMNQGGQQQPFNNGSNQPFAGQPQQQFGGNQPQTNNAPQGNPSSNNGFGGN
APANNDAPFSAGNTNNDGEQKIDVSDDELPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=1162681 ABGT69_RS05765 WP_003715685.1 1141403..1141978(-) (ssb) [MAG: Limosilactobacillus oris isolate metabat2_pooled_metaflye.974 MAG]
ATGATTAATCGTGCAGTCTTAACTGGGCGTTTAACGAGAGATCCTGAGTTGCGGTACACGACGAGCGGGACAGCGGTAGT
ATCATTTACCCTGGCTGTTGACCGGCAATTCCGGAACCAGAACGGGGACCGGGACGCCGACTTTGTCAACTGCGTCATCT
GGCGTAAGTCCGCGGAAAACTTCAGTAACTTCACGCATAAGGGTTCCCTAGTGGGGGTCGAAGGCCGGATTCAAACCCGG
AACTACGAAAACCAGCAGGGTAACCGGGTATACGTTACCGAAGTCGTCGTTGATAACTTCGCATTGCTTGAACCCCGGCA
AAATGGCGGGATGAACCAGGGCGGTCAGCAACAACCATTTAACAATGGCAGCAATCAACCGTTTGCCGGTCAGCCCCAGC
AGCAATTCGGTGGTAATCAGCCACAGACTAATAATGCTCCTCAAGGGAATCCATCATCAAATAACGGCTTCGGTGGGAAC
GCCCCAGCCAATAACGATGCGCCTTTCTCTGCCGGCAATACGAATAATGACGGCGAACAAAAGATTGACGTGTCAGATGA
TGAATTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.184

100

0.607
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.832

100

0.518

Multiple sequence alignment