Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilI   Type   Machinery gene
Locus tag   AABJ29_RS02330 Genome accession   NZ_OZ004876
Coordinates   452777..453385 (+) Length   202 a.a.
NCBI ID   WP_338362088.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae isolate 632_2023     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 447777..458385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ29_RS02305 - 448195..448527 (+) 333 WP_003687908.1 hypothetical protein -
  AABJ29_RS02310 - 448886..449395 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  AABJ29_RS02315 - 449625..450206 (-) 582 WP_003701053.1 superoxide dismutase -
  AABJ29_RS02320 dnaB 450369..451775 (+) 1407 WP_241532347.1 replicative DNA helicase -
  AABJ29_RS02325 pilH 452083..452748 (+) 666 WP_263055817.1 GspH/FimT family pseudopilin Machinery gene
  AABJ29_RS02330 pilI 452777..453385 (+) 609 WP_338362088.1 type IV pilus modification protein PilV Machinery gene
  AABJ29_RS02335 pilJ 453382..454350 (+) 969 WP_260236889.1 PilW family protein Machinery gene
  AABJ29_RS02340 pilK 454329..454937 (+) 609 WP_215318018.1 pilus assembly PilX family protein Machinery gene
  AABJ29_RS02345 pilL 454939..455412 (+) 474 WP_260237126.1 PilX family type IV pilin Machinery gene
  AABJ29_RS02350 - 456024..456469 (-) 446 Protein_458 AzlC family ABC transporter permease -
  AABJ29_RS02355 dut 456635..457087 (+) 453 WP_260236890.1 dUTP diphosphatase -
  AABJ29_RS02360 dapC 457165..458352 (+) 1188 WP_260236891.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21942.90 Da        Isoelectric Point: 4.8017

>NTDB_id=1162614 AABJ29_RS02330 WP_338362088.1 452777..453385(+) (pilI) [Neisseria gonorrhoeae isolate 632_2023]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYTGSYPPTSSDGDFKLNTLISKRDLAKAQLDRFGYELKNALPDVVAIRYAVCKDSSGNAPTLSGGTFSPNCDDKANG
DTLIKVLWVNDSAGDSDIARTNLEVSGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1162614 AABJ29_RS02330 WP_338362088.1 452777..453385(+) (pilI) [Neisseria gonorrhoeae isolate 632_2023]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGTTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTACAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCGGAGACACAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACACGGGGTCGTACCCCCCCACTTCCTCTGACGGCGATTTCAAGCTTAATACTTTGATAAGTAAGAGGGA
TTTGGCAAAAGCCCAGTTGGACAGGTTCGGTTATGAATTGAAAAACGCCTTGCCGGATGTGGTAGCTATTCGTTACGCCG
TCTGCAAGGATTCGTCGGGTAACGCGCCGACATTGTCCGGCGGTACTTTTTCTCCAAATTGCGATGATAAGGCAAACGGG
GATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATCGCCCGTACGAATCTTGAAGTGAGCGG
CGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGTGAATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilI Neisseria gonorrhoeae MS11

94.059

100

0.941
  pilV Neisseria gonorrhoeae MS11

94.059

100

0.941
  pilV Neisseria meningitidis 8013

84.951

100

0.866

Multiple sequence alignment