Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   STAB902_RS01275 Genome accession   NZ_CP007041
Coordinates   244846..246348 (+) Length   500 a.a.
NCBI ID   WP_011054186.1    Uniprot ID   A0A5S4TK45
Organism   Streptococcus pyogenes STAB902     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 239846..251348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAB902_RS01260 (STAB902_01325) - 239897..241080 (-) 1184 Protein_217 D-alanyl-D-alanine carboxypeptidase family protein -
  STAB902_RS01265 (STAB902_01330) pbp3 241248..242480 (-) 1233 WP_002991111.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  STAB902_RS01270 (STAB902_01335) amiA 242811..244781 (+) 1971 WP_002992224.1 peptide ABC transporter substrate-binding protein Regulator
  STAB902_RS01275 (STAB902_01340) amiC 244846..246348 (+) 1503 WP_011054186.1 ABC transporter permease Regulator
  STAB902_RS01280 (STAB902_01345) amiD 246348..247274 (+) 927 WP_011054187.1 oligopeptide ABC transporter permease OppC Regulator
  STAB902_RS01285 (STAB902_01350) amiE 247283..248353 (+) 1071 WP_002992231.1 ABC transporter ATP-binding protein Regulator
  STAB902_RS01290 (STAB902_01355) amiF 248346..249269 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  STAB902_RS10600 - 249307..249396 (-) 90 WP_109821088.1 IS3 family transposase -
  STAB902_RS10165 (STAB902_01360) - 249417..249662 (-) 246 WP_030126956.1 hypothetical protein -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 56091.44 Da        Isoelectric Point: 10.2222

>NTDB_id=116247 STAB902_RS01275 WP_011054186.1 244846..246348(+) (amiC) [Streptococcus pyogenes STAB902]
MKKYILNRIMRSLVSVVLVTALTYTIVYTLVPTSLIFKQDPNYNKMTTTPDKKVAYENLTFQRMGYVNYFSSKELKDNAS
KVDSSVTTEATSANKAIYEKYIDSLGNGWQLKRFPASKQFYAIRNIPIYERVWNFFSNLVVIDHPWKIQDKDNPKLARYI
RLEKDKSVGWSLVGSGTKHKYLLYTNGKFPYLHQNFVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDVTFPSGVTKKSS
VDIYSRSYKNPKSLDDITKVNYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVMFSYIVGLPLGLFMARFKNTYFDRFSTA
TMTFMLALPSIAVIYVVRFLGGMAGLPDSFPMLGASDPKSYILPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYRGHLFKNAMVPIVSGVPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLG
DIVMTLVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=116247 STAB902_RS01275 WP_011054186.1 244846..246348(+) (amiC) [Streptococcus pyogenes STAB902]
ATGAAAAAATACATTTTAAACCGTATCATGCGATCGTTAGTGTCGGTAGTTTTGGTAACGGCTTTAACATACACCATCGT
ATATACTCTAGTACCTACCAGCCTTATCTTTAAACAAGACCCTAATTATAATAAAATGACAACAACACCAGATAAAAAAG
TAGCGTATGAAAATCTAACTTTTCAACGTATGGGTTATGTCAATTATTTTTCAAGCAAAGAATTAAAAGATAATGCTTCT
AAAGTAGATAGTAGTGTAACGACAGAAGCAACTAGTGCTAACAAAGCTATCTATGAGAAGTATATTGATTCTCTTGGCAA
TGGCTGGCAGCTAAAACGCTTCCCCGCTAGCAAACAGTTTTATGCAATTCGCAATATTCCTATTTACGAACGTGTTTGGA
ACTTTTTCTCAAATCTAGTTGTTATTGATCACCCTTGGAAGATTCAGGATAAAGACAATCCAAAATTAGCTAGGTATATT
CGTCTAGAAAAAGATAAATCAGTTGGCTGGTCACTTGTTGGTTCGGGGACAAAACATAAATATCTCCTCTACACTAACGG
AAAATTTCCTTATCTTCACCAAAACTTTGTTACCCTAAACTTAGGAACATCTTACCCAACATACAGCAATATTCCTGTTC
TTCAGGTTATTTCACAAGGGCAAGGACGAACAGCTCTTCAAGATGTGACCTTCCCATCAGGTGTCACTAAGAAATCGTCA
GTGGATATCTATAGCCGTAGCTACAAAAATCCAAAATCATTGGATGATATCACCAAGGTAAACTATGGTAAGGGAGATTC
CTACACTAAAACCATCAATAATTATGTCGACCCATCAATGATTCACAATTCTTTTGTAATTGGTTTTTTTGGTGTTATGT
TTTCCTATATCGTTGGTTTGCCTCTTGGTTTATTTATGGCTCGGTTTAAAAATACCTATTTTGACCGTTTCTCAACAGCG
ACCATGACCTTCATGCTTGCTTTACCAAGTATTGCTGTTATCTATGTTGTTCGCTTCCTAGGTGGCATGGCTGGTTTACC
AGATAGTTTTCCAATGCTAGGGGCATCTGATCCTAAATCTTATATTTTACCAGCCCTTATTTTAGGAATTTTAAATATTC
CAACTACGGTTATCTGGTTCCGTCGCTATCTTGTTGACCTTCAGGCCAGTGATTGGGTACGTTTTGCGCGTTCAAAAGGA
TTATCAGAATCTGAAATTTACAGAGGGCATCTCTTCAAAAATGCCATGGTCCCAATTGTGTCAGGGGTTCCTGCAAGTAT
TATCCTTGCTATTGGTGGTGCAACCTTAACAGAGACTGTCTTTGCCTTCCCGGGTATGGGTAAAATGTTAATTGATTCTA
TTAAATCTGCTAACAATTCTATGATTGTTGGATTAACCTTTATCTTCACTGTCTTGTCAATTGTTTCACTTTTACTAGGA
GATATTGTCATGACCCTTGTCGATCCACGTATTAAATTGTCAACAAAAAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4TK45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

59.6

100

0.596
  amiC Streptococcus thermophilus LMD-9

59.2

100

0.592
  amiC Streptococcus thermophilus LMG 18311

59.2

100

0.592

Multiple sequence alignment