Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   STAB902_RS01280 Genome accession   NZ_CP007041
Coordinates   246348..247274 (+) Length   308 a.a.
NCBI ID   WP_011054187.1    Uniprot ID   -
Organism   Streptococcus pyogenes STAB902     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 241348..252274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAB902_RS01270 (STAB902_01335) amiA 242811..244781 (+) 1971 WP_002992224.1 peptide ABC transporter substrate-binding protein Regulator
  STAB902_RS01275 (STAB902_01340) amiC 244846..246348 (+) 1503 WP_011054186.1 ABC transporter permease Regulator
  STAB902_RS01280 (STAB902_01345) amiD 246348..247274 (+) 927 WP_011054187.1 oligopeptide ABC transporter permease OppC Regulator
  STAB902_RS01285 (STAB902_01350) amiE 247283..248353 (+) 1071 WP_002992231.1 ABC transporter ATP-binding protein Regulator
  STAB902_RS01290 (STAB902_01355) amiF 248346..249269 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  STAB902_RS10600 - 249307..249396 (-) 90 WP_109821088.1 IS3 family transposase -
  STAB902_RS10165 (STAB902_01360) - 249417..249662 (-) 246 WP_030126956.1 hypothetical protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34890.86 Da        Isoelectric Point: 8.5670

>NTDB_id=116248 STAB902_RS01280 WP_011054187.1 246348..247274(+) (amiD) [Streptococcus pyogenes STAB902]
MESIDKSKFRFVERDSEASEVIDTPAYSYWKSVFRQFFSKKSTVFMLVILVTVLMMSFIYPMFANYDFNDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINITIGVVLGAIWGVSKVFDKVMIEIYNIISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQLVSVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=116248 STAB902_RS01280 WP_011054187.1 246348..247274(+) (amiD) [Streptococcus pyogenes STAB902]
ATGGAATCGATTGATAAATCTAAATTTCGATTTGTTGAGCGCGATAGTGAAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTACTGGAAATCAGTGTTTCGTCAGTTTTTTTCTAAAAAATCTACAGTCTTTATGCTCGTGATTTTAGTGACAGTCT
TGATGATGAGCTTTATTTATCCAATGTTTGCCAACTACGACTTTAATGACGTTAGTAATATCAATGACTTTTCAAAGCGT
TATATTTGGCCAAATGCAGAGTACTGGTTTGGAACCGACAAAAATGGGCAATCTCTGTTTGATGGTGTTTGGTATGGGGC
ACGTAATTCTATTTTAATCTCAGTTATAGCGACACTAATTAATATCACCATTGGGGTAGTGTTAGGAGCCATATGGGGAG
TTTCTAAAGTATTTGATAAAGTTATGATTGAAATTTATAACATTATCTCAAATATCCCTTCTATGCTTATTATCATTGTT
TTGACCTATTCATTAGGTGCAGGATTTTGGAATTTGATTCTAGCTTTCTGTATCACTGGATGGATTGGTGTCGCCTACTC
CATCCGTGTTCAAATCTTGCGTTACCGTGATTTAGAATACAACCTTGCTAGTCAAACTTTGGGAACACCCATGTACAAGA
TTGCTGTTAAGAACCTCCTGCCTCAATTGGTTTCAGTTATCATGACTATGTTGTCACAAATGCTACCAGTTTATGTATCT
TCTGAGGCCTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACCACTCCAAGTTTAGGACGTTTGATTGCTAATTATTC
AAGCAACTTAACAACAAATGCCTACCTCTTTTGGATTCCCTTAGTAACATTGATTTTAGTATCGTTACCACTATACATTG
TCGGACAAAACTTGGCTGATGCCAGTGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.701

100

0.737
  amiD Streptococcus thermophilus LMG 18311

73.052

100

0.731
  amiD Streptococcus thermophilus LMD-9

73.052

100

0.731

Multiple sequence alignment