Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   U5A08_RS17360 Genome accession   NZ_OY817130
Coordinates   3793079..3795304 (-) Length   741 a.a.
NCBI ID   WP_321847669.1    Uniprot ID   -
Organism   Pseudomonas paraveronii strain FLM 11     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3788079..3800304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U5A08_RS17325 murB 3788449..3789468 (-) 1020 WP_253396693.1 UDP-N-acetylmuramate dehydrogenase -
  U5A08_RS17330 - 3789465..3789929 (-) 465 WP_253396694.1 low molecular weight protein-tyrosine-phosphatase -
  U5A08_RS17335 kdsB 3789929..3790693 (-) 765 WP_253396696.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  U5A08_RS17340 - 3790690..3790875 (-) 186 WP_003174668.1 Trm112 family protein -
  U5A08_RS17345 lpxK 3790899..3791909 (-) 1011 WP_253396698.1 tetraacyldisaccharide 4'-kinase -
  U5A08_RS17350 - 3791909..3792337 (-) 429 WP_024076131.1 biopolymer transporter ExbD -
  U5A08_RS17355 exbB 3792334..3792969 (-) 636 WP_247407985.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  U5A08_RS17360 comA 3793079..3795304 (-) 2226 WP_321847669.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  U5A08_RS17365 - 3795440..3795955 (+) 516 WP_253396704.1 DUF2062 domain-containing protein -
  U5A08_RS17370 - 3795959..3797329 (-) 1371 WP_321847671.1 sensor histidine kinase -
  U5A08_RS17375 - 3797316..3798044 (-) 729 WP_253396708.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80223.25 Da        Isoelectric Point: 10.8667

>NTDB_id=1162042 U5A08_RS17360 WP_321847669.1 3793079..3795304(-) (comA) [Pseudomonas paraveronii strain FLM 11]
MRTGMFALALGLLALRFLPALPPTGALLALVQVALMLLPFRTYPLAFFLFGLSWACMSAQWALDDRLRPALDGQTRWLEG
RVTGLPQRTDSGVRFELTDSRSRKARLPTRIRLSWHGGPPVRSGERWRLAVTLKRPSGLLNFHGVDHEARLLAQRIGATG
SVKDGERLAPARNAWRDGVRQRLMAVDAQGREAGLAALVLGDGSGLAAEDWRVLQDTGTVHLLVISGQHIGLLAGLIYAL
VAALARYGCWPRTWPWLPWACGLAFAAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLAFNGVLILEPL
ASLQPGFWLSFAAVAVLALTFGGRLGWWSVWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPLANLFAVPWISLVVLPLAL
LGTALLALPFVGEGLLWLAGGALGGLFKALALLAAQLPAWIPAEVPVGYWLVSLVGAVLLLLPKGVPFRLLGWPMLLLAV
FPPREPVPHGQVDVLQLDVGQGQALILRTRHHTLLYDAGPRSGAVDLGARVVLPSLKKLGIDALDMMLLSHADADHAGGA
AAVASGLPIKRVVGGETEGLPAFLQTQPCISGEQWVWDGVSFELWQWPDAISRNPKSCVLQVQANGERLLLTGDIDRAAE
KAFLASALAVPTDWLQAPHHGSRSSSSAPFLQRLAPKSVLISRGRGNAFGHPHPQVVERYQALGSQVYDSAEQGAVRLRL
GAFAPPIVARSQRRFWREALP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=1162042 U5A08_RS17360 WP_321847669.1 3793079..3795304(-) (comA) [Pseudomonas paraveronii strain FLM 11]
ATGAGGACAGGGATGTTCGCGCTTGCACTCGGGCTGCTTGCGCTGCGATTTCTACCCGCACTGCCGCCTACCGGGGCGCT
GTTGGCCCTGGTGCAGGTGGCGTTGATGCTGCTGCCGTTTCGTACCTACCCGCTGGCGTTTTTCCTATTCGGCTTGAGCT
GGGCGTGCATGAGCGCGCAGTGGGCACTGGATGATCGCTTGCGTCCGGCGCTCGACGGCCAGACACGTTGGCTGGAGGGG
CGCGTGACCGGGTTGCCGCAGCGGACCGACAGCGGCGTGCGTTTCGAGCTAACCGACAGCCGGTCGCGCAAAGCCCGGCT
GCCCACGCGGATTCGGCTGTCCTGGCACGGTGGGCCACCGGTACGCAGCGGTGAACGCTGGCGCCTCGCGGTGACGCTTA
AACGTCCGTCGGGCCTGCTCAACTTCCATGGCGTCGACCATGAAGCCAGGCTGCTCGCCCAGCGTATTGGCGCCACCGGC
TCGGTGAAGGACGGCGAACGTCTGGCGCCGGCCCGCAATGCTTGGCGCGACGGGGTCCGTCAGCGCTTGATGGCGGTGGA
TGCCCAAGGGCGCGAGGCCGGACTGGCGGCCCTGGTGCTGGGGGACGGATCGGGACTGGCGGCCGAGGACTGGCGTGTCT
TGCAGGACACCGGCACGGTGCATTTGCTGGTCATTTCCGGCCAGCACATCGGCCTGTTGGCGGGGTTGATCTACGCGCTC
GTCGCCGCTCTGGCGCGCTACGGCTGCTGGCCGCGGACCTGGCCGTGGCTGCCGTGGGCGTGTGGCCTGGCGTTTGCCGC
AGCGCTGGGGTACGGCCTGCTGGCGGGATTCGGCGTGCCGGTGCAGCGCGCCTGTGTGATGGTGGGGCTGGTGTTGCTGT
GGCGTTTGCGTTTCCGTCATTTGGGCATCTGGTGGCCACTGTTGCTGGCGTTTAATGGCGTGCTGATCCTTGAACCCTTG
GCCAGCTTGCAGCCGGGGTTCTGGTTGTCCTTTGCGGCGGTGGCGGTGCTGGCGCTGACTTTCGGCGGGCGATTGGGGTG
GTGGAGCGTCTGGCAGGCATGGACCCGTCCGCAATGGTTGATTGCCATCGGTCTTTTTCCGGTGTTGCTGGTGCTCGGTT
TGCCCATCAGTCTCAGCGCGCCGCTGGCTAATCTATTTGCGGTGCCGTGGATCAGCCTGGTGGTGTTGCCCCTGGCCTTA
CTTGGGACTGCACTGCTGGCGCTGCCGTTTGTGGGCGAGGGCTTGTTGTGGCTGGCGGGTGGGGCGCTGGGCGGCCTGTT
CAAGGCCCTGGCGCTACTGGCGGCACAATTACCTGCGTGGATACCGGCCGAGGTGCCCGTGGGGTATTGGCTGGTAAGCC
TGGTCGGTGCGGTGTTGCTGCTGCTGCCCAAGGGCGTGCCGTTTCGGCTGCTGGGCTGGCCGATGCTGTTGTTGGCAGTG
TTCCCGCCGCGCGAGCCGGTGCCCCACGGGCAGGTGGACGTGTTGCAGTTGGATGTCGGGCAAGGGCAGGCATTGATCCT
GCGCACCCGCCATCACACCTTGCTCTACGATGCCGGCCCGCGCTCCGGGGCGGTTGATCTCGGCGCGCGGGTGGTGTTGC
CGTCGCTGAAGAAGCTCGGGATAGACGCTTTGGACATGATGTTATTGAGCCATGCCGATGCCGATCATGCTGGCGGTGCG
GCCGCTGTCGCCAGCGGGCTGCCGATCAAACGGGTCGTCGGTGGCGAAACCGAAGGGTTGCCGGCGTTTCTTCAGACTCA
GCCTTGTATCAGCGGTGAGCAGTGGGTGTGGGATGGTGTGTCATTTGAACTTTGGCAATGGCCCGACGCCATTAGCCGCA
ACCCGAAGTCCTGTGTATTGCAGGTGCAGGCCAATGGCGAACGCCTGCTGCTCACTGGCGATATCGATCGCGCCGCAGAG
AAGGCGTTTCTGGCCTCGGCCCTGGCGGTGCCGACCGATTGGCTGCAAGCACCTCACCACGGTAGCCGCAGCTCTTCATC
CGCTCCCTTTCTGCAGCGGCTGGCGCCGAAGTCGGTGCTGATTTCCCGAGGGCGTGGCAATGCGTTCGGCCATCCTCACC
CGCAGGTGGTGGAACGCTATCAAGCATTGGGTAGTCAGGTGTATGACAGCGCCGAACAGGGCGCGGTGCGTTTGCGATTA
GGGGCCTTCGCACCACCGATTGTTGCGCGCAGTCAACGCCGCTTCTGGCGAGAAGCGTTACCGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.501

97.031

0.587
  comA Ralstonia pseudosolanacearum GMI1000

35.204

100

0.372

Multiple sequence alignment