Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   U5A08_RS17355 Genome accession   NZ_OY817130
Coordinates   3792334..3792969 (-) Length   211 a.a.
NCBI ID   WP_247407985.1    Uniprot ID   -
Organism   Pseudomonas paraveronii strain FLM 11     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3787334..3797969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U5A08_RS17320 - 3787703..3788374 (+) 672 WP_247404731.1 Bax inhibitor-1/YccA family protein -
  U5A08_RS17325 murB 3788449..3789468 (-) 1020 WP_253396693.1 UDP-N-acetylmuramate dehydrogenase -
  U5A08_RS17330 - 3789465..3789929 (-) 465 WP_253396694.1 low molecular weight protein-tyrosine-phosphatase -
  U5A08_RS17335 kdsB 3789929..3790693 (-) 765 WP_253396696.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  U5A08_RS17340 - 3790690..3790875 (-) 186 WP_003174668.1 Trm112 family protein -
  U5A08_RS17345 lpxK 3790899..3791909 (-) 1011 WP_253396698.1 tetraacyldisaccharide 4'-kinase -
  U5A08_RS17350 - 3791909..3792337 (-) 429 WP_024076131.1 biopolymer transporter ExbD -
  U5A08_RS17355 exbB 3792334..3792969 (-) 636 WP_247407985.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  U5A08_RS17360 comA 3793079..3795304 (-) 2226 WP_321847669.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  U5A08_RS17365 - 3795440..3795955 (+) 516 WP_253396704.1 DUF2062 domain-containing protein -
  U5A08_RS17370 - 3795959..3797329 (-) 1371 WP_321847671.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22840.01 Da        Isoelectric Point: 8.0857

>NTDB_id=1162041 U5A08_RS17355 WP_247407985.1 3792334..3792969(-) (exbB) [Pseudomonas paraveronii strain FLM 11]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1162041 U5A08_RS17355 WP_247407985.1 3792334..3792969(-) (exbB) [Pseudomonas paraveronii strain FLM 11]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCTTGAGCTCCATCGCCGCACTCGGCATCGTTGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACGCCCGAGCATCTGCTGGGACAGGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAGAAACTCAAGGAACTGCGCGCCAACTCGCCCCTGGGTGAAATCCTCGCGGCCGGGTTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAGGCCGCAGCGCGGGTCATCCATGAGCTGGAACGCTATAT
CAATGCCCTCGGCACCATCGCCGCCATGGCGCCGTTGCTCGGTCTGCTGGGCACCGTCCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAATGCGGCGGTGCTGGCCGGTGGTATCTCGAAGGCCCTGATCACCACGGCG
GCGGGCCTGATGGTCGGTATTCCCTCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGATCGATGAACTCGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGACGTGGATCTGGTCGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858

Multiple sequence alignment