Detailed information NTG1162035

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: U5A08_RS04140
• Genome accession: NZ_OY817130
• Coordinates: 934476..935342 (-)
• Length: 288 a.a.
• NCBI ID: WP_321850449.1
• Uniprot ID: -
• Organism: Pseudomonas paraveronii strain FLM 11
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 929476..940342

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U5A08_RS04105	-	930142..931044 (-)	903	WP_321850445.1	GntR family transcriptional regulator	-
U5A08_RS04110	-	931214..931963 (+)	750	WP_253393352.1	TIM barrel protein	-
U5A08_RS04115	-	932217..932684 (+)	468	WP_321850447.1	FAD/FMN-containing dehydrogenase	-
U5A08_RS04120	-	932681..933370 (+)	690	WP_253393354.1	energy-coupling factor ABC transporter permease	-
U5A08_RS04125	-	933447..933662 (+)	216	WP_247396658.1	hypothetical protein	-
U5A08_RS04130	yacG	933659..933859 (-)	201	WP_253393355.1	DNA gyrase inhibitor YacG	-
U5A08_RS04135	coaE	933856..934479 (-)	624	WP_253393356.1	dephospho-CoA kinase	-
U5A08_RS04140	pilD	934476..935342 (-)	867	WP_321850449.1	A24 family peptidase	Machinery gene
U5A08_RS04145	pilC	935339..936547 (-)	1209	WP_321850450.1	type II secretion system F family protein	Machinery gene
U5A08_RS04150	-	936749..937162 (+)	414	WP_321852171.1	pilin	-
U5A08_RS04155	-	937198..938607 (+)	1410	WP_321850451.1	O-antigen ligase family protein	-
U5A08_RS04165	-	938856..939161 (+)	306	WP_253393360.1	DUF6388 family protein	-
U5A08_RS04170	nadC	939205..940053 (-)	849	WP_321850453.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31914.13 Da
• Isoelectric Point: 8.1600

>NTDB_id=1162035 U5A08_RS04140 WP_321850449.1 934476..935342(-) (pilD) [Pseudomonas paraveronii strain FLM 11]
MNLLLSQQPWAFVVMALVLGLIVGSFLNVLVWRLPKMLEREWRAQAHEVLGLPGDPVGPRYNLMQPNSCCPHCNQPIRPW
ENIPLLSYLMLRGRCTHCREAISARYPFTELACAVISAVVAWHFGFGWQAGAVMLLSWGLLAMSLIDVDHQLLPDVLVLP
LLWLGLMLNSIGLLVPLPDALWGAVIGYMSLWTVFWLFKLATGKDGMGYGDFKLLALLGAWGGWQILPMTLLISSLVGVC
GGLILLRRSKTQTSAPMPFGPYLAIAGWIAVLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=1162035 U5A08_RS04140 WP_321850449.1 934476..935342(-) (pilD) [Pseudomonas paraveronii strain FLM 11]
TTGAACCTGCTGCTGAGCCAGCAGCCGTGGGCCTTTGTCGTCATGGCTCTGGTGCTGGGCCTGATCGTGGGCAGTTTCCT
CAACGTGCTGGTGTGGCGCCTGCCGAAAATGCTCGAACGCGAATGGCGCGCGCAGGCCCATGAGGTGCTCGGTTTGCCCG
GCGATCCCGTCGGGCCGAGATACAACCTGATGCAGCCCAATTCCTGCTGCCCGCATTGCAATCAGCCGATTCGGCCCTGG
GAAAACATCCCGCTGCTCAGCTACCTGATGCTCCGGGGCCGTTGTACGCATTGCCGCGAAGCGATCAGCGCGCGTTATCC
CTTTACCGAACTGGCGTGCGCAGTGATCTCGGCCGTGGTGGCCTGGCATTTCGGCTTTGGCTGGCAAGCCGGCGCGGTGA
TGCTGTTGAGCTGGGGCTTACTGGCAATGAGCTTGATCGACGTGGACCACCAACTGCTGCCCGACGTGCTGGTCCTGCCG
CTGTTGTGGCTGGGGCTGATGCTTAACAGTATCGGGTTGCTGGTGCCCCTGCCCGACGCACTGTGGGGCGCGGTGATCGG
GTACATGAGCCTGTGGACGGTGTTCTGGCTGTTCAAGCTGGCCACCGGCAAGGACGGCATGGGCTACGGCGACTTCAAGT
TGTTGGCGCTGCTCGGCGCCTGGGGCGGCTGGCAAATCCTGCCGATGACGTTGCTGATCTCATCGCTGGTGGGCGTGTGC
GGCGGGCTGATCCTGCTGCGCCGGAGCAAGACCCAGACCTCCGCGCCGATGCCGTTTGGTCCCTATCTGGCAATTGCCGG
CTGGATTGCCGTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-241)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.755	96.528	0.538
pilD	Vibrio campbellii strain DS40M4	51.254	96.875	0.497
pilD	Acinetobacter baumannii D1279779	48.905	95.139	0.465
pilD	Acinetobacter nosocomialis M2	48.54	95.139	0.462
pilD	Neisseria gonorrhoeae MS11	48.889	93.75	0.458