Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   U5A05_RS06655 Genome accession   NZ_OY817088
Coordinates   1428629..1430833 (+) Length   734 a.a.
NCBI ID   WP_321835977.1    Uniprot ID   -
Organism   Pseudomonas kulmbachensis strain FLM 004-28     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1423629..1435833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U5A05_RS06635 - 1425214..1425840 (+) 627 WP_261741334.1 glutathione S-transferase -
  U5A05_RS06640 - 1425974..1426906 (+) 933 WP_261741335.1 ABC transporter ATP-binding protein -
  U5A05_RS06645 - 1426903..1427682 (+) 780 WP_261741336.1 ABC transporter permease -
  U5A05_RS06650 - 1427968..1428483 (-) 516 WP_261741337.1 DUF2062 domain-containing protein -
  U5A05_RS06655 comA 1428629..1430833 (+) 2205 WP_321835977.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  U5A05_RS06660 exbB 1430882..1431517 (+) 636 WP_261742390.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  U5A05_RS06665 - 1431514..1431942 (+) 429 WP_321835978.1 biopolymer transporter ExbD -
  U5A05_RS06670 lpxK 1431942..1432946 (+) 1005 WP_321835979.1 tetraacyldisaccharide 4'-kinase -
  U5A05_RS06675 - 1432977..1433162 (+) 186 WP_019827923.1 Trm112 family protein -
  U5A05_RS06680 kdsB 1433159..1433923 (+) 765 WP_261741341.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  U5A05_RS06685 murB 1433920..1434939 (+) 1020 WP_321835980.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 734 a.a.        Molecular weight: 79616.54 Da        Isoelectric Point: 10.3248

>NTDB_id=1162022 U5A05_RS06655 WP_321835977.1 1428629..1430833(+) (comA) [Pseudomonas kulmbachensis strain FLM 004-28]
MFALASGLIALRFLPALPSAGWLLLMLLAGLLLLVSRAWQVGLFVLGLSWACVQGQRALDDRLADSLDGRTLWIEGRVVG
LPQHTGASVRFELQGAMSRHGTLPTTIRLSWYGGPPVNSGERWRLAVKLKKPRGLINPQGFDYQAWLLAQRIGATGVVKD
GRLLMAASHAWRDGLRQRLLQIDANGRTPWLAALVMGDSSGLSRDDWALLQATGTVHLLVISGQHIGLFAGLIYGLIALM
ARYGVWPRVLPWLPWACGLAFAGATGYGALAGFEVPVQRACVMLGLVLIWRLRFRHLGVWLPFLLALNAVLLVEPLASLR
PGLWLSFAAVAVLIFTFSARLGAWSWRAAWLRPQGLIALGLFPLLWILGLPISLSGPLANLMAVPWISLVVLPTALLGTL
LLPVPVLGENLLWLSGGLLDVLIQGLHLLGGVFNPWSPAVAPIYIWLLTALGVLLLLLPAGVALRPLGWPLVLLAVFAPR
EQTPHGQVEVLQLDVGQGLALVLRTRNHTLLYDAGPKVWNFDQGERVVVPALRSLGVGALDVMLLSHADADHAGGALAVQ
RAFSVGRVLGGDVPGLPEQLQAQPCVSGEGWEWDGVKFSLWQWADATDSNQKSCVLQVLAGTERLLLTGDIDARAEHALL
KSSLAVPTRWLQSPHHGSKTSSSMAFLKALAPQAVLISRGHANNFGHPHPHVMARYQVLGLQVWDSAEQGAVWFRLGANG
KAESMRDQHRFWRD

Nucleotide


Download         Length: 2205 bp        

>NTDB_id=1162022 U5A05_RS06655 WP_321835977.1 1428629..1430833(+) (comA) [Pseudomonas kulmbachensis strain FLM 004-28]
ATGTTTGCGCTCGCATCGGGCCTGATTGCGCTGCGGTTTTTACCCGCGTTGCCCTCAGCGGGCTGGTTGCTGCTGATGCT
GTTGGCGGGGCTATTGCTCTTGGTCTCGCGCGCCTGGCAGGTGGGGCTTTTTGTGCTTGGGTTGAGCTGGGCCTGTGTTC
AGGGGCAACGGGCGCTGGATGATCGCCTGGCGGATTCACTTGATGGTCGCACCCTCTGGATTGAAGGGCGAGTGGTCGGG
TTGCCGCAACACACTGGCGCCTCAGTACGTTTTGAATTGCAGGGCGCCATGTCGCGCCACGGCACATTGCCCACGACCAT
CAGGTTGAGCTGGTATGGCGGGCCGCCCGTCAACAGTGGCGAACGTTGGCGGCTGGCGGTCAAGCTCAAGAAGCCCAGGG
GTTTGATTAACCCCCAGGGTTTTGATTATCAGGCCTGGTTGCTGGCGCAACGGATTGGTGCGACAGGTGTGGTCAAGGAT
GGTCGGTTACTGATGGCAGCCAGTCATGCCTGGCGTGACGGTTTGCGCCAGCGCCTGTTGCAGATCGATGCCAATGGTCG
AACGCCTTGGCTGGCGGCACTGGTCATGGGCGACAGTTCGGGGCTGAGCCGTGACGACTGGGCGCTGCTGCAAGCGACCG
GCACGGTGCATTTACTGGTGATCTCGGGGCAGCATATCGGGCTGTTTGCCGGGTTGATCTATGGGTTGATAGCCCTGATG
GCGCGTTATGGTGTGTGGCCACGGGTTTTGCCGTGGCTGCCCTGGGCCTGCGGTCTGGCGTTTGCGGGAGCTACTGGGTA
TGGCGCACTGGCGGGCTTTGAAGTGCCGGTGCAGCGCGCCTGCGTCATGCTGGGGCTGGTGCTGATATGGCGTTTGCGGT
TTCGTCATCTGGGCGTGTGGCTGCCTTTTCTGTTGGCCCTCAATGCGGTATTGCTCGTGGAGCCGCTGGCAAGTTTGAGG
CCGGGCTTGTGGTTGTCGTTTGCTGCCGTTGCAGTGCTGATTTTTACCTTCAGTGCGCGTTTGGGGGCGTGGAGCTGGCG
GGCTGCATGGTTGCGACCGCAGGGGCTGATTGCTCTGGGCTTGTTTCCGCTGCTGTGGATCCTCGGTTTGCCCATCAGCC
TGAGCGGGCCGCTGGCTAATTTAATGGCCGTACCCTGGATCAGTCTGGTGGTGCTACCGACAGCGCTGCTGGGTACGTTG
CTACTACCTGTGCCCGTGCTGGGTGAAAATCTGCTGTGGCTGTCGGGCGGCTTGCTCGACGTATTGATTCAAGGGCTGCA
CCTGCTGGGCGGTGTTTTTAATCCCTGGTCGCCTGCAGTCGCGCCGATTTACATTTGGCTGCTGACAGCCCTTGGAGTCC
TGCTCCTGTTGCTGCCTGCCGGGGTAGCACTCCGGCCGTTGGGTTGGCCGTTGGTCCTGTTGGCGGTATTTGCGCCCCGT
GAGCAGACCCCCCATGGTCAGGTCGAGGTACTGCAACTGGATGTCGGGCAGGGGCTGGCGCTGGTCTTGCGCACCCGCAA
TCACACGCTGTTATATGACGCAGGCCCGAAGGTCTGGAATTTCGATCAGGGCGAGCGGGTCGTGGTCCCTGCGTTGCGTT
CATTGGGGGTTGGGGCATTGGATGTGATGCTGCTCAGCCACGCCGACGCGGATCATGCGGGCGGTGCGTTGGCGGTGCAG
CGAGCATTCAGTGTGGGCCGGGTGCTCGGGGGTGATGTGCCAGGGCTGCCAGAGCAATTGCAGGCGCAGCCGTGCGTCAG
TGGGGAAGGCTGGGAGTGGGATGGCGTCAAGTTCTCGCTCTGGCAGTGGGCTGATGCGACTGACAGCAACCAGAAATCCT
GTGTGCTGCAGGTGCTGGCAGGTACTGAGCGGCTGCTGCTGACGGGCGATATCGACGCCCGCGCCGAGCACGCCCTGCTG
AAAAGCTCGCTGGCCGTTCCTACCCGCTGGTTGCAATCGCCACACCACGGCAGCAAGACCTCGTCGTCGATGGCTTTTCT
CAAGGCGCTGGCGCCGCAAGCAGTGCTGATTTCCCGGGGGCATGCTAATAACTTTGGTCACCCCCATCCGCACGTGATGG
CCCGTTACCAGGTGCTGGGGTTGCAGGTGTGGGACAGCGCCGAGCAAGGTGCGGTGTGGTTTCGTTTGGGAGCGAACGGC
AAGGCCGAGAGCATGCGCGACCAGCACCGGTTCTGGCGCGATTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(494-681)

Competence protein (Competence)

(194-457)

Domain of unknown function (DUF4131) (DUF4131)

(16-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.666

97.956

0.584
  comA Ralstonia pseudosolanacearum GMI1000

34.456

100

0.362

Multiple sequence alignment