Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   U9J37_RS12715 Genome accession   NZ_OY808997
Coordinates   2777626..2778258 (-) Length   210 a.a.
NCBI ID   WP_004410522.1    Uniprot ID   A0A240EMA6
Organism   Vibrio sp. 16 isolate VDT1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2772626..2783258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9J37_RS12695 (VDT1_2587) - 2772724..2773938 (+) 1215 WP_005471154.1 aspartate aminotransferase family protein -
  U9J37_RS12700 (VDT1_2588) astA 2774049..2775068 (+) 1020 WP_005471035.1 arginine N-succinyltransferase -
  U9J37_RS12705 (VDT1_2589) astD 2775103..2776560 (+) 1458 WP_005471006.1 succinylglutamate-semialdehyde dehydrogenase -
  U9J37_RS12710 (VDT1_2590) - 2776747..2777538 (+) 792 WP_005471066.1 DUF1338 domain-containing protein -
  U9J37_RS12715 (VDT1_2591) crp 2777626..2778258 (-) 633 WP_004410522.1 cAMP-activated global transcriptional regulator CRP Regulator
  U9J37_RS12720 (VDT1_2592) - 2778500..2779369 (-) 870 WP_005471097.1 phosphoribulokinase -
  U9J37_RS12725 (VDT1_2593) - 2779452..2779664 (-) 213 WP_005471041.1 YheU family protein -
  U9J37_RS12730 (VDT1_2594) - 2779703..2780680 (-) 978 WP_005471153.1 hydrolase -
  U9J37_RS12735 (VDT1_2595) - 2780690..2781169 (-) 480 WP_005471127.1 TIGR02444 family protein -
  U9J37_RS12740 (VDT1_2596) - 2781166..2783088 (-) 1923 WP_005470868.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23596.37 Da        Isoelectric Point: 7.4009

>NTDB_id=1161992 U9J37_RS12715 WP_004410522.1 2777626..2778258(-) (crp) [Vibrio sp. 16 isolate VDT1]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=1161992 U9J37_RS12715 WP_004410522.1 2777626..2778258(-) (crp) [Vibrio sp. 16 isolate VDT1]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGCACGCTAATTCACGCGGGCGAGAAAGCTGAGACGTTGTACTACATCGTTAAAGGTTCAGTTGCGGTTCTTATTAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAAGGTGACTTTATCGGTGAACTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACCGCATGGGTTCGTGCTAAATCTCCTTGTGAAGTAGCAGAAATTTCATTCAAGAAGTTCCGTCAGCTAAT
TCAAGTAAACCCAGATATCCTAATGCGCCTTTCAGCGCAAATGGCAAGCCGCCTTCAAGTGACAAGCCAAAAAGTGGGCG
ACCTTGCGTTCTTAGACGTTACTGGCCGTATCGCGCAAACGCTACTAAACCTAGCGAAGCAACCAGATGCGATGACTCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATCTCTGCTCACGGTAAGACAATCGTTGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment