Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   RG38_RS18550 Genome accession   NZ_CP010145
Coordinates   3527372..3528397 (-) Length   341 a.a.
NCBI ID   WP_000644904.1    Uniprot ID   P0ACN8
Organism   Escherichia coli strain D5     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3522372..3533397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG38_RS18520 (RG38_17520) zapB 3522456..3522701 (+) 246 WP_001296623.1 septal ring assembly protein ZapB -
  RG38_RS18525 (RG38_17525) rraA 3522786..3523271 (-) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  RG38_RS18530 (RG38_17530) menA 3523364..3524290 (-) 927 WP_001307494.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  RG38_RS18535 (RG38_17535) hslU 3524357..3525688 (-) 1332 WP_001293343.1 HslU--HslV peptidase ATPase subunit -
  RG38_RS18540 (RG38_17540) hslV 3525698..3526228 (-) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  RG38_RS18545 (RG38_17545) ftsN 3526321..3527280 (-) 960 WP_000068834.1 cell division protein FtsN -
  RG38_RS18550 (RG38_17550) cytR 3527372..3528397 (-) 1026 WP_000644904.1 DNA-binding transcriptional regulator CytR Regulator
  RG38_RS18555 (RG38_17555) priA 3528553..3530751 (-) 2199 WP_001315935.1 primosomal protein N' Machinery gene
  RG38_RS18560 (RG38_17560) rpmE 3530954..3531166 (+) 213 WP_000710769.1 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37819.78 Da        Isoelectric Point: 6.3842

>NTDB_id=116199 RG38_RS18550 WP_000644904.1 3527372..3528397(-) (cytR) [Escherichia coli strain D5]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=116199 RG38_RS18550 WP_000644904.1 3527372..3528397(-) (cytR) [Escherichia coli strain D5]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAACCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGCTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCACTGTGTCACTATCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

64.179

98.24

0.63
  cytR Vibrio cholerae C6706

65.443

95.894

0.628

Multiple sequence alignment