Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ACLMBU_RS25640 | Genome accession | NZ_OY782519 |
| Coordinates | 5494335..5495201 (+) | Length | 288 a.a. |
| NCBI ID | WP_321359336.1 | Uniprot ID | - |
| Organism | MAG: Pseudomonas extremaustralis isolate 6328a48c-d287-402b-9a22-4be284e47c5f | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5489335..5500201
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLMBU_RS25610 (U3A02_RS25565) | nadC | 5489618..5490466 (+) | 849 | WP_010565569.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ACLMBU_RS25615 (U3A02_RS25570) | - | 5490514..5490819 (-) | 306 | WP_321359330.1 | DUF6388 family protein | - |
| ACLMBU_RS25625 (U3A02_RS25580) | - | 5491077..5492477 (-) | 1401 | WP_321359332.1 | O-antigen ligase family protein | - |
| ACLMBU_RS25630 (U3A02_RS25585) | - | 5492513..5492926 (-) | 414 | WP_010565572.1 | pilin | - |
| ACLMBU_RS25635 (U3A02_RS25590) | pilC | 5493130..5494338 (+) | 1209 | WP_321359333.1 | type II secretion system F family protein | Machinery gene |
| ACLMBU_RS25640 (U3A02_RS25595) | pilD | 5494335..5495201 (+) | 867 | WP_321359336.1 | A24 family peptidase | Machinery gene |
| ACLMBU_RS25645 (U3A02_RS25600) | coaE | 5495198..5495821 (+) | 624 | WP_078835105.1 | dephospho-CoA kinase | - |
| ACLMBU_RS25650 (U3A02_RS25605) | yacG | 5495818..5496018 (+) | 201 | WP_010565576.1 | DNA gyrase inhibitor YacG | - |
| ACLMBU_RS25655 (U3A02_RS25610) | - | 5496015..5496230 (-) | 216 | WP_003171680.1 | hypothetical protein | - |
| ACLMBU_RS25660 (U3A02_RS25615) | - | 5496306..5496995 (-) | 690 | WP_321359371.1 | energy-coupling factor ABC transporter permease | - |
| ACLMBU_RS25665 (U3A02_RS25620) | - | 5496992..5497459 (-) | 468 | WP_010565578.1 | hypothetical protein | - |
| ACLMBU_RS25670 (U3A02_RS25625) | - | 5497559..5498188 (+) | 630 | WP_010565579.1 | DUF1780 domain-containing protein | - |
| ACLMBU_RS25675 (U3A02_RS25630) | - | 5498243..5498416 (+) | 174 | WP_010565580.1 | DUF3094 family protein | - |
| ACLMBU_RS25680 (U3A02_RS25635) | - | 5498477..5499775 (+) | 1299 | WP_321359377.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 288 a.a. Molecular weight: 31825.95 Da Isoelectric Point: 7.9841
>NTDB_id=1161916 ACLMBU_RS25640 WP_321359336.1 5494335..5495201(+) (pilD) [MAG: Pseudomonas extremaustralis isolate 6328a48c-d287-402b-9a22-4be284e47c5f]
MNLLPGEHPWAFVALAVALGLIVGSFLNVLVWRLPKMLAREWRAQAHEVLGLPAEPAGTTYNLAYPNSCCPHCDHPIRPW
ENIPLLSYLFLRGRCAHCRGAISLRYPLTELASGIICAVVAWHFGFGWQAAAVMVLSWGLLAMSLIDADHQLLPDVLVLP
LLWLGLIVNAFSLLTTLPDALWGAVIGYMSLWTVFWLFKLITGKEGMGYGDFKLMALLGAWGGWQILPLTLLISSLMGVF
VGLILIRLRKTQASTPMPFGPYLAITGWIALLWGGQITDFYLQSVGFR
MNLLPGEHPWAFVALAVALGLIVGSFLNVLVWRLPKMLAREWRAQAHEVLGLPAEPAGTTYNLAYPNSCCPHCDHPIRPW
ENIPLLSYLFLRGRCAHCRGAISLRYPLTELASGIICAVVAWHFGFGWQAAAVMVLSWGLLAMSLIDADHQLLPDVLVLP
LLWLGLIVNAFSLLTTLPDALWGAVIGYMSLWTVFWLFKLITGKEGMGYGDFKLMALLGAWGGWQILPLTLLISSLMGVF
VGLILIRLRKTQASTPMPFGPYLAITGWIALLWGGQITDFYLQSVGFR
Nucleotide
Download Length: 867 bp
>NTDB_id=1161916 ACLMBU_RS25640 WP_321359336.1 5494335..5495201(+) (pilD) [MAG: Pseudomonas extremaustralis isolate 6328a48c-d287-402b-9a22-4be284e47c5f]
TTGAACCTGCTGCCCGGTGAGCACCCTTGGGCTTTTGTCGCGCTGGCAGTGGCGCTGGGGCTGATCGTCGGCAGCTTTCT
CAATGTGCTGGTATGGCGCCTGCCGAAAATGCTCGCCCGGGAATGGCGCGCCCAGGCCCATGAAGTGCTCGGCTTGCCTG
CCGAACCCGCCGGAACGACCTACAACCTGGCGTACCCCAACTCCTGTTGCCCGCACTGCGATCATCCGATTCGCCCGTGG
GAAAATATCCCACTGCTCAGCTATCTGTTCCTCAGGGGCCGCTGCGCCCATTGCCGGGGGGCGATCAGCCTCCGCTATCC
GCTCACCGAACTGGCGAGCGGCATCATCTGTGCGGTGGTGGCCTGGCACTTTGGTTTCGGCTGGCAAGCGGCAGCGGTGA
TGGTATTGAGCTGGGGCTTGCTGGCAATGAGCCTGATCGACGCCGACCACCAATTGCTGCCCGATGTCCTGGTGCTGCCA
TTGCTATGGCTCGGGCTGATCGTCAATGCATTCTCACTGTTGACCACATTGCCAGATGCCCTGTGGGGCGCGGTGATCGG
GTACATGAGCCTGTGGACGGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGAGGGGATGGGCTACGGTGACTTCAAGT
TAATGGCGCTGCTCGGCGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACACTGCTGATCTCATCACTGATGGGCGTGTTC
GTCGGGCTGATCCTGATACGCCTGCGCAAGACCCAGGCATCGACGCCCATGCCGTTTGGTCCATATCTGGCGATTACCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA
TTGAACCTGCTGCCCGGTGAGCACCCTTGGGCTTTTGTCGCGCTGGCAGTGGCGCTGGGGCTGATCGTCGGCAGCTTTCT
CAATGTGCTGGTATGGCGCCTGCCGAAAATGCTCGCCCGGGAATGGCGCGCCCAGGCCCATGAAGTGCTCGGCTTGCCTG
CCGAACCCGCCGGAACGACCTACAACCTGGCGTACCCCAACTCCTGTTGCCCGCACTGCGATCATCCGATTCGCCCGTGG
GAAAATATCCCACTGCTCAGCTATCTGTTCCTCAGGGGCCGCTGCGCCCATTGCCGGGGGGCGATCAGCCTCCGCTATCC
GCTCACCGAACTGGCGAGCGGCATCATCTGTGCGGTGGTGGCCTGGCACTTTGGTTTCGGCTGGCAAGCGGCAGCGGTGA
TGGTATTGAGCTGGGGCTTGCTGGCAATGAGCCTGATCGACGCCGACCACCAATTGCTGCCCGATGTCCTGGTGCTGCCA
TTGCTATGGCTCGGGCTGATCGTCAATGCATTCTCACTGTTGACCACATTGCCAGATGCCCTGTGGGGCGCGGTGATCGG
GTACATGAGCCTGTGGACGGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGAGGGGATGGGCTACGGTGACTTCAAGT
TAATGGCGCTGCTCGGCGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACACTGCTGATCTCATCACTGATGGGCGTGTTC
GTCGGGCTGATCCTGATACGCCTGCGCAAGACCCAGGCATCGACGCCCATGCCGTTTGGTCCATATCTGGCGATTACCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.191 |
97.917 |
0.521 |
| pilD | Vibrio campbellii strain DS40M4 |
48.571 |
97.222 |
0.472 |
| pilD | Acinetobacter nosocomialis M2 |
49.446 |
94.097 |
0.465 |
| pilD | Acinetobacter baumannii D1279779 |
49.446 |
94.097 |
0.465 |
| pilD | Neisseria gonorrhoeae MS11 |
49.225 |
89.583 |
0.441 |