Detailed information
Bioinformatically predicted
Overview
| Name | Cj0011c | Type | Machinery gene |
| Locus tag | ACKU3H_RS02970 | Genome accession | NZ_OY780939 |
| Coordinates | 623911..624150 (-) | Length | 79 a.a. |
| NCBI ID | WP_407933676.1 | Uniprot ID | - |
| Organism | MAG: Halarcobacter sp. isolate c23ce619-377f-483f-a597-00588adfbfa9 | ||
| Function | DNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 618911..629150
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACKU3H_RS02935 (SNR01_RS02930) | pyrE | 619002..619610 (+) | 609 | WP_320035479.1 | orotate phosphoribosyltransferase | - |
| ACKU3H_RS02940 (SNR01_RS02935) | - | 619617..620093 (+) | 477 | WP_320035480.1 | RDD family protein | - |
| ACKU3H_RS02945 (SNR01_RS02940) | - | 620094..621191 (+) | 1098 | WP_320035481.1 | MFS transporter | - |
| ACKU3H_RS02950 (SNR01_RS02945) | - | 621216..621944 (-) | 729 | WP_320035482.1 | dienelactone hydrolase family protein | - |
| ACKU3H_RS02955 (SNR01_RS02950) | - | 622021..622758 (-) | 738 | WP_320035483.1 | YaaA family protein | - |
| ACKU3H_RS02960 (SNR01_RS02955) | - | 622760..623413 (-) | 654 | WP_320035484.1 | small multi-drug export protein | - |
| ACKU3H_RS02965 (SNR01_RS02960) | - | 623406..623819 (-) | 414 | WP_320035485.1 | YchJ family metal-binding protein | - |
| ACKU3H_RS02970 (SNR01_RS02965) | Cj0011c | 623911..624150 (-) | 240 | WP_407933676.1 | ComEA family DNA-binding protein | Machinery gene |
| ACKU3H_RS02975 (SNR01_RS02970) | - | 624296..624706 (+) | 411 | WP_320035486.1 | hypothetical protein | - |
| ACKU3H_RS02980 (SNR01_RS02975) | - | 624708..625289 (+) | 582 | WP_320035487.1 | hypothetical protein | - |
| ACKU3H_RS02985 (SNR01_RS02980) | - | 625281..625682 (-) | 402 | WP_320035488.1 | DUF695 domain-containing protein | - |
| ACKU3H_RS02990 (SNR01_RS02985) | ung | 625691..626341 (-) | 651 | WP_320035489.1 | uracil-DNA glycosylase | - |
| ACKU3H_RS02995 (SNR01_RS02990) | - | 626428..627018 (+) | 591 | WP_320035490.1 | LemA family protein | - |
| ACKU3H_RS03000 (SNR01_RS02995) | - | 627020..627910 (+) | 891 | WP_320035491.1 | TPM domain-containing protein | - |
| ACKU3H_RS03005 (SNR01_RS03000) | - | 627910..628521 (+) | 612 | WP_320035492.1 | TPM domain-containing protein | - |
Sequence
Protein
Download Length: 79 a.a. Molecular weight: 8829.48 Da Isoelectric Point: 10.3420
>NTDB_id=1161790 ACKU3H_RS02970 WP_407933676.1 623911..624150(-) (Cj0011c) [MAG: Halarcobacter sp. isolate c23ce619-377f-483f-a597-00588adfbfa9]
MIKKLVLSILFLSTLLFSAVDFNTASKEELMAIKGIGEKKAEAIIEYRKNTKINSIDDLSTIKGFGPKLISKIKEQNKN
MIKKLVLSILFLSTLLFSAVDFNTASKEELMAIKGIGEKKAEAIIEYRKNTKINSIDDLSTIKGFGPKLISKIKEQNKN
Nucleotide
Download Length: 240 bp
>NTDB_id=1161790 ACKU3H_RS02970 WP_407933676.1 623911..624150(-) (Cj0011c) [MAG: Halarcobacter sp. isolate c23ce619-377f-483f-a597-00588adfbfa9]
ATGATTAAGAAACTTGTTTTAAGTATTTTGTTTTTGTCGACATTACTTTTTTCAGCAGTTGATTTTAATACTGCATCAAA
AGAGGAATTAATGGCAATTAAGGGAATTGGAGAAAAAAAAGCAGAGGCTATTATTGAGTATAGAAAAAATACAAAAATTA
ATAGTATAGATGATCTATCTACAATTAAAGGTTTTGGTCCTAAATTAATATCTAAAATAAAAGAACAAAACAAAAATTAA
ATGATTAAGAAACTTGTTTTAAGTATTTTGTTTTTGTCGACATTACTTTTTTCAGCAGTTGATTTTAATACTGCATCAAA
AGAGGAATTAATGGCAATTAAGGGAATTGGAGAAAAAAAAGCAGAGGCTATTATTGAGTATAGAAAAAATACAAAAATTA
ATAGTATAGATGATCTATCTACAATTAAAGGTTTTGGTCCTAAATTAATATCTAAAATAAAAGAACAAAACAAAAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| Cj0011c | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
52.055 |
92.405 |
0.481 |
| comE | Neisseria gonorrhoeae MS11 |
43.836 |
92.405 |
0.405 |
| comE | Neisseria gonorrhoeae MS11 |
43.836 |
92.405 |
0.405 |
| comE | Neisseria gonorrhoeae MS11 |
43.836 |
92.405 |
0.405 |
| comE | Neisseria gonorrhoeae MS11 |
43.836 |
92.405 |
0.405 |