Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   U8955_RS08835 Genome accession   NZ_OY769914
Coordinates   1755885..1757846 (-) Length   653 a.a.
NCBI ID   WP_038804593.1    Uniprot ID   A0A7T3DZ64
Organism   Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1750885..1762846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8955_RS08810 (SDENT7746_08835) - 1751203..1751910 (-) 708 WP_038804801.1 hypothetical protein -
  U8955_RS08815 (SDENT7746_08840) - 1752071..1752364 (-) 294 WP_038804589.1 hypothetical protein -
  U8955_RS08820 (SDENT7746_08845) rnmV 1752422..1753024 (-) 603 WP_038804590.1 ribonuclease M5 -
  U8955_RS08825 (SDENT7746_08850) - 1753021..1753797 (-) 777 WP_038804591.1 TatD family hydrolase -
  U8955_RS08830 (SDENT7746_08855) - 1753949..1755793 (+) 1845 WP_038804592.1 APC family permease -
  U8955_RS08835 (SDENT7746_08860) amiA 1755885..1757846 (-) 1962 WP_038804593.1 peptide ABC transporter substrate-binding protein Regulator
  U8955_RS08840 (SDENT7746_08865) rpmH 1757989..1758123 (-) 135 WP_000831905.1 50S ribosomal protein L34 -
  U8955_RS08845 (SDENT7746_08870) - 1758269..1759483 (-) 1215 WP_038804594.1 pyridoxal phosphate-dependent aminotransferase -
  U8955_RS08850 (SDENT7746_08875) - 1759627..1759926 (-) 300 WP_038804595.1 hypothetical protein -
  U8955_RS08855 (SDENT7746_08880) - 1760093..1760545 (+) 453 WP_000079159.1 universal stress protein -
  U8955_RS08860 (SDENT7746_08885) - 1760581..1761966 (-) 1386 WP_038804597.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72928.92 Da        Isoelectric Point: 4.7164

>NTDB_id=1161745 U8955_RS08835 WP_038804593.1 1755885..1757846(-) (amiA) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
MKKSKALLLGAGILSASFLMVACSSAQSNTDKTYSYVFASNPDTLDYITSTRGSTSSITTNLIDGLFENDKYGNLVPSMA
ESWKVSKDGLTYTYKIRKGVKWYTSEGEEYAEVTAHDFVTGLKYAADKKAENLYLVQDSIKGLADYVEGKTSDFETVGVK
AVDDYTLQYTLNKPESYWNSKTTGGILSPVNEAFLKSKGDDFGSVTPSSILSNGPYLFKSFTSKSLIEFEKNPNYWDKDN
VKIEKVKLSFYDGSDQDSLARGFLEGNYTDGRIFPTSSVFDQLKKGNEDKITYTPQNAVTFYYLFNVNRQSYNQTMKQTD
KEKADSRAAMQNKDFRQAINFAFDRHAYAAQTNGEDGADRILRNTVTPSNFVQIGGKNFGDAVNEKIVNYGSEWANVNLN
DAQPAFLNADKAKAEFAKAKESLQAEGVTFPIHLDMPVDQTAKLDVQQASSFKQTVEETLGSDNIVIDVIQLSPDEKDNA
TFFANTAEQKDYDIDISGWSGDYSDPKTYLDLLDPDSGSQLKNLGLTPGKDNDVKEKIGLSTYKKLLDEADKEVENTQVR
YEKFAEVQAWLTDSALFLPVQSGGANPIFRKTVPFTGAFSFVGHKGDADNYKYLELQKDPVTAKQYQELYEKWQKEKTES
NKKAQEDLANHIQ

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=1161745 U8955_RS08835 WP_038804593.1 1755885..1757846(-) (amiA) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
ATGAAGAAATCAAAAGCCCTCCTACTAGGGGCTGGAATTTTGAGTGCAAGCTTCTTGATGGTGGCTTGTAGTTCGGCACA
ATCAAATACAGATAAAACCTACTCATATGTATTTGCTAGCAATCCAGATACATTAGACTATATCACTTCGACACGTGGTT
CGACTTCTAGCATTACGACAAACTTGATCGATGGTTTGTTTGAAAATGATAAGTATGGGAACCTCGTCCCTTCTATGGCG
GAGTCATGGAAAGTATCAAAGGATGGCTTGACCTATACCTATAAAATCCGAAAGGGAGTTAAGTGGTATACCTCTGAAGG
AGAAGAATACGCTGAAGTGACAGCTCATGACTTTGTGACGGGTCTCAAGTATGCGGCGGATAAAAAGGCTGAAAACTTGT
ATTTGGTACAAGACTCCATCAAAGGTTTGGCAGACTATGTTGAGGGGAAAACATCTGACTTTGAGACTGTTGGAGTCAAG
GCAGTGGACGACTATACTCTCCAATACACCTTGAACAAACCAGAGTCTTATTGGAATTCAAAGACAACAGGGGGGATTTT
GAGCCCTGTCAATGAAGCCTTTTTGAAATCTAAGGGAGATGACTTTGGAAGTGTTACCCCATCTAGTATTCTGTCAAATG
GGCCATACTTGTTCAAGTCTTTCACATCAAAATCTTTAATTGAGTTTGAAAAGAACCCTAATTACTGGGATAAGGACAAT
GTGAAGATTGAGAAAGTAAAACTTTCCTTCTATGATGGTTCAGACCAAGATAGTTTGGCTCGAGGATTCTTAGAGGGCAA
CTACACAGACGGACGTATCTTCCCGACAAGTTCTGTGTTTGACCAGTTGAAAAAAGGGAATGAGGATAAAATTACTTATA
CTCCTCAAAATGCTGTGACTTTCTACTATCTTTTCAATGTCAACCGTCAAAGTTACAATCAAACCATGAAACAGACGGAT
AAAGAAAAGGCGGATTCTCGTGCAGCTATGCAAAATAAGGACTTCCGTCAGGCGATTAACTTTGCCTTTGACCGTCATGC
CTATGCCGCACAGACAAATGGAGAAGATGGAGCTGATCGTATCCTTCGAAACACAGTCACACCAAGTAACTTTGTTCAAA
TCGGTGGGAAAAACTTCGGAGATGCTGTCAATGAAAAGATAGTCAACTACGGTTCAGAGTGGGCTAATGTCAATCTAAAC
GATGCTCAGCCTGCCTTCTTGAATGCTGATAAAGCCAAGGCAGAATTTGCCAAAGCCAAAGAAAGTTTGCAGGCAGAAGG
TGTGACCTTCCCTATCCATTTAGACATGCCGGTGGATCAGACTGCTAAGTTGGACGTACAGCAAGCCAGTTCTTTCAAAC
AGACAGTTGAAGAGACACTTGGATCAGACAATATTGTTATCGATGTGATTCAACTTTCTCCAGACGAGAAAGACAATGCA
ACCTTCTTTGCCAATACAGCCGAACAAAAGGACTACGACATCGATATCTCAGGTTGGAGTGGAGATTACTCTGATCCCAA
GACCTATCTTGACCTCTTGGATCCAGACTCTGGTTCTCAGTTAAAAAATCTTGGCTTGACTCCAGGAAAAGACAATGATG
TCAAGGAAAAAATCGGTCTCTCTACCTACAAGAAGTTGTTGGATGAGGCAGATAAAGAAGTTGAAAACACTCAGGTTCGC
TATGAGAAATTTGCCGAAGTTCAAGCTTGGCTAACAGATAGTGCTCTCTTTCTGCCAGTTCAAAGCGGAGGAGCTAATCC
AATCTTCCGTAAGACTGTACCGTTCACAGGAGCCTTCTCATTTGTTGGACACAAAGGGGATGCGGACAACTACAAATACC
TTGAGTTGCAAAAAGATCCCGTGACTGCGAAACAGTACCAAGAACTTTATGAAAAATGGCAAAAAGAAAAAACTGAGTCC
AATAAAAAAGCTCAAGAAGATCTAGCTAACCACATTCAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T3DZ64

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.012

100

0.564
  amiA3 Streptococcus thermophilus LMD-9

55.708

100

0.56
  amiA3 Streptococcus thermophilus LMG 18311

55.403

100

0.557

Multiple sequence alignment