Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACKPBX_RS07855 Genome accession   NZ_OY762653
Coordinates   1638443..1638994 (-) Length   183 a.a.
NCBI ID   WP_086628720.1    Uniprot ID   -
Organism   MAG: Trichococcus shcherbakoviae isolate 3f5bddbc-f9f7-4dd9-9883-cce70881a83c     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1633443..1643994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKPBX_RS07850 (SNQ41_RS07825) rpsR 1638157..1638399 (-) 243 WP_068562133.1 30S ribosomal protein S18 -
  ACKPBX_RS07855 (SNQ41_RS07830) ssb 1638443..1638994 (-) 552 WP_086628720.1 single-stranded DNA-binding protein Machinery gene
  ACKPBX_RS07860 (SNQ41_RS07835) rpsF 1639033..1639326 (-) 294 WP_086628719.1 30S ribosomal protein S6 -
  ACKPBX_RS07865 (SNQ41_RS07840) gyrA 1639541..1642132 (-) 2592 WP_319996419.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20136.84 Da        Isoelectric Point: 4.7621

>NTDB_id=1161643 ACKPBX_RS07855 WP_086628720.1 1638443..1638994(-) (ssb) [MAG: Trichococcus shcherbakoviae isolate 3f5bddbc-f9f7-4dd9-9883-cce70881a83c]
MINNVVLVGRLTKDVDLRYTSSGTAVGTFALAVNRQFTNQAGEREADFINCVIWRKSAENFANFTRKGSLVGITGRIQTR
NYDNQQGQRVYVTEVVADNFTLLESKTTTEQRPRETGAASSNQAAPSANFGSSKSFESNQNQGQYNNQYSSPKQNGFSDF
NSTADPFSSNGESIDISDDDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1161643 ACKPBX_RS07855 WP_086628720.1 1638443..1638994(-) (ssb) [MAG: Trichococcus shcherbakoviae isolate 3f5bddbc-f9f7-4dd9-9883-cce70881a83c]
ATGATTAATAATGTTGTCTTAGTCGGCAGACTTACAAAAGATGTTGATTTACGCTATACATCCAGCGGCACAGCAGTCGG
AACCTTCGCTCTTGCAGTAAACAGACAGTTTACTAACCAAGCAGGAGAAAGAGAAGCTGACTTCATCAATTGTGTCATTT
GGAGAAAATCTGCAGAGAATTTCGCGAATTTCACTCGTAAAGGCTCTTTAGTCGGTATCACTGGCCGAATCCAAACAAGG
AATTATGATAATCAACAAGGACAGCGCGTATACGTGACTGAAGTCGTTGCAGATAATTTCACATTGTTGGAATCGAAAAC
AACTACCGAACAAAGACCGAGAGAGACTGGCGCAGCTTCTTCAAATCAAGCAGCTCCGAGTGCAAACTTCGGATCAAGCA
AATCTTTTGAATCTAACCAAAACCAAGGACAGTATAATAATCAATACTCTTCTCCGAAACAAAACGGTTTTTCTGATTTT
AACTCAACTGCTGATCCGTTTTCATCAAACGGAGAATCAATTGACATTTCAGATGATGATTTACCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

67.027

100

0.678
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.098

100

0.541
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.475

64.481

0.377

Multiple sequence alignment