Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACLMBR_RS10475 | Genome accession | NZ_OY761017 |
| Coordinates | 2186871..2187422 (+) | Length | 183 a.a. |
| NCBI ID | WP_086628720.1 | Uniprot ID | - |
| Organism | MAG: Trichococcus shcherbakoviae isolate 89b17532-9bee-499f-becb-1a49c542a750 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2178837..2227202 | 2186871..2187422 | within | 0 |
Gene organization within MGE regions
Location: 2178837..2227202
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLMBR_RS10445 (U2929_RS10445) | dnaN | 2178837..2179988 (+) | 1152 | WP_086628715.1 | DNA polymerase III subunit beta | - |
| ACLMBR_RS10450 (U2929_RS10450) | yaaA | 2180352..2180618 (+) | 267 | WP_068562139.1 | S4 domain-containing protein YaaA | - |
| ACLMBR_RS10455 (U2929_RS10455) | recF | 2180615..2181736 (+) | 1122 | WP_086628716.1 | DNA replication/repair protein RecF | - |
| ACLMBR_RS10460 (U2929_RS10460) | gyrB | 2181741..2183678 (+) | 1938 | WP_086628717.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| ACLMBR_RS10465 (U2929_RS10465) | gyrA | 2183733..2186324 (+) | 2592 | WP_233436742.1 | DNA gyrase subunit A | - |
| ACLMBR_RS10470 (U2929_RS10470) | rpsF | 2186539..2186832 (+) | 294 | WP_086628719.1 | 30S ribosomal protein S6 | - |
| ACLMBR_RS10475 (U2929_RS10475) | ssb | 2186871..2187422 (+) | 552 | WP_086628720.1 | single-stranded DNA-binding protein | Machinery gene |
| ACLMBR_RS10480 (U2929_RS10480) | rpsR | 2187466..2187708 (+) | 243 | WP_068562133.1 | 30S ribosomal protein S18 | - |
| ACLMBR_RS10485 (U2929_RS10485) | - | 2188137..2188613 (-) | 477 | WP_321378362.1 | hypothetical protein | - |
| ACLMBR_RS10490 (U2929_RS10490) | - | 2190702..2192720 (+) | 2019 | WP_086628722.1 | DHH family phosphoesterase | - |
| ACLMBR_RS10495 (U2929_RS10495) | rplI | 2192724..2193173 (+) | 450 | WP_086628723.1 | 50S ribosomal protein L9 | - |
| ACLMBR_RS10500 (U2929_RS10500) | dnaB | 2193454..2194821 (+) | 1368 | WP_086628724.1 | replicative DNA helicase | - |
| ACLMBR_RS10505 (U2929_RS10505) | - | 2194941..2196236 (+) | 1296 | WP_086628725.1 | adenylosuccinate synthase | - |
| ACLMBR_RS10515 (U2929_RS10515) | - | 2196546..2197706 (-) | 1161 | WP_321378370.1 | tyrosine-type recombinase/integrase | - |
| ACLMBR_RS10520 (U2929_RS10520) | - | 2197752..2198390 (-) | 639 | WP_321378373.1 | helix-turn-helix transcriptional regulator | - |
| ACLMBR_RS10525 (U2929_RS10525) | - | 2198528..2198764 (+) | 237 | WP_321378376.1 | helix-turn-helix transcriptional regulator | - |
| ACLMBR_RS10530 (U2929_RS10530) | - | 2198767..2199036 (+) | 270 | WP_321378378.1 | hypothetical protein | - |
| ACLMBR_RS10535 (U2929_RS10535) | - | 2199074..2199334 (+) | 261 | WP_321378381.1 | hypothetical protein | - |
| ACLMBR_RS10540 (U2929_RS10540) | - | 2199445..2199876 (+) | 432 | WP_321378383.1 | hypothetical protein | - |
| ACLMBR_RS10545 (U2929_RS10545) | - | 2200001..2200294 (+) | 294 | WP_321378385.1 | hypothetical protein | - |
| ACLMBR_RS10550 (U2929_RS10550) | - | 2200297..2200533 (+) | 237 | WP_321378389.1 | hypothetical protein | - |
| ACLMBR_RS10555 (U2929_RS10555) | - | 2200574..2201488 (+) | 915 | WP_321378392.1 | hypothetical protein | - |
| ACLMBR_RS10560 (U2929_RS10560) | - | 2201485..2202915 (+) | 1431 | WP_321378395.1 | phage/plasmid primase, P4 family | - |
| ACLMBR_RS10565 (U2929_RS10565) | - | 2203178..2203327 (+) | 150 | WP_321378398.1 | hypothetical protein | - |
| ACLMBR_RS10570 (U2929_RS10570) | - | 2203324..2203665 (+) | 342 | WP_321378400.1 | hypothetical protein | - |
| ACLMBR_RS10575 (U2929_RS10575) | - | 2203755..2203940 (+) | 186 | WP_321378402.1 | hypothetical protein | - |
| ACLMBR_RS10580 (U2929_RS10580) | - | 2204016..2204519 (+) | 504 | WP_321378405.1 | hypothetical protein | - |
| ACLMBR_RS10585 (U2929_RS10585) | - | 2204523..2204981 (+) | 459 | WP_321378409.1 | hypothetical protein | - |
| ACLMBR_RS10590 (U2929_RS10590) | - | 2205322..2205615 (+) | 294 | WP_321378411.1 | hypothetical protein | - |
| ACLMBR_RS10595 (U2929_RS10595) | - | 2205615..2206151 (+) | 537 | WP_321378414.1 | hypothetical protein | - |
| ACLMBR_RS10600 (U2929_RS10600) | - | 2206207..2206428 (+) | 222 | WP_321378417.1 | hypothetical protein | - |
| ACLMBR_RS10605 (U2929_RS10605) | - | 2206439..2207020 (+) | 582 | WP_321378419.1 | head maturation protease, ClpP-related | - |
| ACLMBR_RS10610 (U2929_RS10610) | - | 2207399..2207617 (+) | 219 | WP_321378421.1 | hypothetical protein | - |
| ACLMBR_RS10615 (U2929_RS10615) | - | 2207870..2208172 (+) | 303 | WP_321378425.1 | hypothetical protein | - |
| ACLMBR_RS10620 (U2929_RS10620) | - | 2208533..2208991 (+) | 459 | WP_321378428.1 | Panacea domain-containing protein | - |
| ACLMBR_RS10625 (U2929_RS10625) | - | 2208997..2209584 (+) | 588 | WP_321378431.1 | hypothetical protein | - |
| ACLMBR_RS10630 (U2929_RS10630) | - | 2209831..2210031 (+) | 201 | WP_119093112.1 | hypothetical protein | - |
| ACLMBR_RS10635 (U2929_RS10635) | - | 2210356..2211507 (-) | 1152 | WP_321378434.1 | site-specific integrase | - |
| ACLMBR_RS10640 (U2929_RS10640) | - | 2211572..2212342 (-) | 771 | WP_321378436.1 | helix-turn-helix domain-containing protein | - |
| ACLMBR_RS10645 (U2929_RS10645) | - | 2212490..2212705 (+) | 216 | WP_321378439.1 | helix-turn-helix transcriptional regulator | - |
| ACLMBR_RS10650 (U2929_RS10650) | - | 2212716..2213006 (+) | 291 | WP_321378442.1 | hypothetical protein | - |
| ACLMBR_RS10655 (U2929_RS10655) | - | 2212972..2213253 (+) | 282 | WP_321378445.1 | helix-turn-helix domain-containing protein | - |
| ACLMBR_RS10660 (U2929_RS10660) | - | 2213436..2213603 (+) | 168 | WP_321378447.1 | hypothetical protein | - |
| ACLMBR_RS10665 (U2929_RS10665) | - | 2213721..2214041 (+) | 321 | WP_321378449.1 | hypothetical protein | - |
| ACLMBR_RS10670 (U2929_RS10670) | - | 2214120..2214905 (+) | 786 | WP_321378452.1 | hypothetical protein | - |
| ACLMBR_RS10675 (U2929_RS10675) | - | 2214841..2215713 (+) | 873 | WP_321378454.1 | ATP-binding protein | - |
| ACLMBR_RS10680 (U2929_RS10680) | - | 2215726..2215989 (+) | 264 | WP_321378456.1 | hypothetical protein | - |
| ACLMBR_RS10685 (U2929_RS10685) | - | 2216368..2216529 (+) | 162 | WP_321378459.1 | hypothetical protein | - |
| ACLMBR_RS10690 (U2929_RS10690) | - | 2216533..2217165 (+) | 633 | WP_321378461.1 | hypothetical protein | - |
| ACLMBR_RS10695 (U2929_RS10695) | - | 2217178..2217747 (+) | 570 | WP_321378465.1 | HK97 family phage prohead protease | - |
| ACLMBR_RS10700 (U2929_RS10700) | - | 2217834..2218229 (+) | 396 | WP_321378468.1 | hypothetical protein | - |
| ACLMBR_RS10705 (U2929_RS10705) | - | 2218272..2218724 (+) | 453 | WP_321378471.1 | hypothetical protein | - |
| ACLMBR_RS10710 (U2929_RS10710) | - | 2218738..2219109 (+) | 372 | WP_321378473.1 | hypothetical protein | - |
| ACLMBR_RS10715 (U2929_RS10715) | - | 2219114..2219383 (+) | 270 | WP_321378476.1 | hypothetical protein | - |
| ACLMBR_RS10720 (U2929_RS10720) | - | 2219402..2219779 (+) | 378 | WP_321382062.1 | HNH endonuclease | - |
| ACLMBR_RS10725 (U2929_RS10725) | - | 2219887..2220258 (+) | 372 | WP_321378478.1 | hypothetical protein | - |
| ACLMBR_RS10730 (U2929_RS10730) | - | 2220273..2220458 (+) | 186 | WP_321378481.1 | DUF2292 domain-containing protein | - |
| ACLMBR_RS10735 (U2929_RS10735) | - | 2220535..2223315 (+) | 2781 | WP_321378483.1 | phage tail tape measure protein | - |
| ACLMBR_RS10740 (U2929_RS10740) | - | 2224437..2227202 (+) | 2766 | WP_319995060.1 | sigma-54-dependent transcriptional regulator | - |
Sequence
Protein
Download Length: 183 a.a. Molecular weight: 20136.84 Da Isoelectric Point: 4.7621
>NTDB_id=1161545 ACLMBR_RS10475 WP_086628720.1 2186871..2187422(+) (ssb) [MAG: Trichococcus shcherbakoviae isolate 89b17532-9bee-499f-becb-1a49c542a750]
MINNVVLVGRLTKDVDLRYTSSGTAVGTFALAVNRQFTNQAGEREADFINCVIWRKSAENFANFTRKGSLVGITGRIQTR
NYDNQQGQRVYVTEVVADNFTLLESKTTTEQRPRETGAASSNQAAPSANFGSSKSFESNQNQGQYNNQYSSPKQNGFSDF
NSTADPFSSNGESIDISDDDLPF
MINNVVLVGRLTKDVDLRYTSSGTAVGTFALAVNRQFTNQAGEREADFINCVIWRKSAENFANFTRKGSLVGITGRIQTR
NYDNQQGQRVYVTEVVADNFTLLESKTTTEQRPRETGAASSNQAAPSANFGSSKSFESNQNQGQYNNQYSSPKQNGFSDF
NSTADPFSSNGESIDISDDDLPF
Nucleotide
Download Length: 552 bp
>NTDB_id=1161545 ACLMBR_RS10475 WP_086628720.1 2186871..2187422(+) (ssb) [MAG: Trichococcus shcherbakoviae isolate 89b17532-9bee-499f-becb-1a49c542a750]
ATGATTAATAATGTTGTCTTAGTCGGCAGACTTACAAAAGATGTTGATTTACGCTATACATCCAGCGGCACAGCAGTCGG
AACCTTCGCTCTTGCAGTAAACAGACAGTTTACTAACCAAGCAGGAGAAAGAGAAGCTGACTTCATCAATTGTGTCATTT
GGAGAAAATCTGCAGAGAATTTCGCGAATTTCACTCGTAAAGGCTCTTTAGTCGGTATCACTGGCCGAATCCAAACAAGG
AATTATGATAATCAACAAGGACAGCGCGTATACGTGACTGAAGTCGTTGCAGATAATTTCACATTGTTGGAATCGAAAAC
AACTACCGAACAAAGACCGAGAGAGACTGGCGCAGCTTCTTCAAATCAAGCAGCTCCGAGTGCAAACTTCGGATCAAGCA
AATCTTTTGAATCTAACCAAAACCAAGGACAGTATAATAATCAATACTCTTCTCCGAAACAAAACGGTTTTTCTGATTTT
AACTCAACTGCTGATCCGTTTTCATCAAACGGAGAATCAATTGACATTTCAGATGATGATTTACCGTTCTAG
ATGATTAATAATGTTGTCTTAGTCGGCAGACTTACAAAAGATGTTGATTTACGCTATACATCCAGCGGCACAGCAGTCGG
AACCTTCGCTCTTGCAGTAAACAGACAGTTTACTAACCAAGCAGGAGAAAGAGAAGCTGACTTCATCAATTGTGTCATTT
GGAGAAAATCTGCAGAGAATTTCGCGAATTTCACTCGTAAAGGCTCTTTAGTCGGTATCACTGGCCGAATCCAAACAAGG
AATTATGATAATCAACAAGGACAGCGCGTATACGTGACTGAAGTCGTTGCAGATAATTTCACATTGTTGGAATCGAAAAC
AACTACCGAACAAAGACCGAGAGAGACTGGCGCAGCTTCTTCAAATCAAGCAGCTCCGAGTGCAAACTTCGGATCAAGCA
AATCTTTTGAATCTAACCAAAACCAAGGACAGTATAATAATCAATACTCTTCTCCGAAACAAAACGGTTTTTCTGATTTT
AACTCAACTGCTGATCCGTTTTCATCAAACGGAGAATCAATTGACATTTCAGATGATGATTTACCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
67.027 |
100 |
0.678 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.098 |
100 |
0.541 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.475 |
64.481 |
0.377 |