Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACLMBP_RS03585 Genome accession   NZ_OY760436
Coordinates   689348..689857 (+) Length   169 a.a.
NCBI ID   WP_015880231.1    Uniprot ID   -
Organism   MAG: Exiguobacterium profundum isolate 8ac3ae97-4b35-4674-8cf6-a299ed097117     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 684348..694857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLMBP_RS03555 (U2924_RS03545) - 684953..685735 (+) 783 WP_031424085.1 ParB/RepB/Spo0J family partition protein -
  ACLMBP_RS03560 (U2924_RS03550) yyaC 685708..686334 (-) 627 WP_321283575.1 spore protease YyaC -
  ACLMBP_RS03565 (U2924_RS03555) - 686504..687445 (+) 942 WP_074035244.1 mechanosensitive ion channel family protein -
  ACLMBP_RS03570 (U2924_RS03560) - 687435..687638 (+) 204 WP_047795718.1 DUF951 domain-containing protein -
  ACLMBP_RS03575 (U2924_RS03565) ychF 687792..688892 (+) 1101 WP_031424089.1 redox-regulated ATPase YchF -
  ACLMBP_RS03580 (U2924_RS03570) rpsF 689023..689310 (+) 288 WP_015880230.1 30S ribosomal protein S6 -
  ACLMBP_RS03585 (U2924_RS03575) ssbA 689348..689857 (+) 510 WP_015880231.1 single-stranded DNA-binding protein Machinery gene
  ACLMBP_RS03590 (U2924_RS03580) rpsR 689901..690131 (+) 231 WP_015880232.1 30S ribosomal protein S18 -
  ACLMBP_RS03595 (U2924_RS03585) - 690284..692275 (+) 1992 WP_196431646.1 DHH family phosphoesterase -
  ACLMBP_RS03600 (U2924_RS03590) rplI 692272..692715 (+) 444 WP_159563195.1 50S ribosomal protein L9 -
  ACLMBP_RS03605 (U2924_RS03595) dnaB 692733..694085 (+) 1353 WP_015880235.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18119.93 Da        Isoelectric Point: 5.0077

>NTDB_id=1161478 ACLMBP_RS03585 WP_015880231.1 689348..689857(+) (ssbA) [MAG: Exiguobacterium profundum isolate 8ac3ae97-4b35-4674-8cf6-a299ed097117]
MINRVVLVGRLTRDPEMRYTQSGIAVTRLTLACDRPFAGQDGKRETDFIDCVVWRKQAENVAQYLKKGSMAGVDGRLQIS
SYEGQDGQRRYRAEVVADSVRFLEPRGASGQREQAPSGDVFGGGESSGSGWGAGAASTSSQSSNSNKGFDADPFSGGGKI
DLSDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=1161478 ACLMBP_RS03585 WP_015880231.1 689348..689857(+) (ssbA) [MAG: Exiguobacterium profundum isolate 8ac3ae97-4b35-4674-8cf6-a299ed097117]
ATGATTAACCGAGTTGTGTTAGTTGGTCGATTGACTCGCGATCCCGAAATGCGTTATACGCAGAGCGGAATCGCCGTAAC
ACGCCTTACTCTCGCTTGCGATCGTCCATTCGCTGGACAAGATGGGAAGCGCGAGACGGACTTTATTGATTGTGTCGTTT
GGCGCAAACAAGCAGAGAACGTAGCACAATACTTGAAAAAGGGCAGCATGGCCGGCGTTGACGGTCGCCTTCAAATCAGT
AGTTACGAAGGACAAGATGGCCAACGTCGTTACCGGGCAGAAGTAGTCGCAGACAGCGTACGCTTCCTTGAACCACGCGG
AGCCTCAGGGCAACGTGAGCAAGCACCATCTGGAGATGTCTTCGGTGGTGGTGAATCAAGTGGATCAGGATGGGGCGCAG
GAGCCGCTTCGACTTCATCTCAGTCCTCGAATTCGAATAAAGGTTTTGACGCAGATCCGTTCTCGGGTGGCGGCAAAATC
GACTTGTCAGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.977

100

0.544
  ssb Latilactobacillus sakei subsp. sakei 23K

49.412

100

0.497
  ssb Glaesserella parasuis strain SC1401

32.447

100

0.361

Multiple sequence alignment