Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACKPCD_RS02240 Genome accession   NZ_OY759718
Coordinates   407382..407933 (-) Length   183 a.a.
NCBI ID   WP_068562132.1    Uniprot ID   A0A847D5R2
Organism   MAG: Trichococcus flocculiformis isolate 659e37ff-3402-4023-a990-0c9469b16b9d     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 402382..412933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKPCD_RS02235 (U2959_RS02225) rpsR 407096..407338 (-) 243 WP_068562133.1 30S ribosomal protein S18 -
  ACKPCD_RS02240 (U2959_RS02230) ssb 407382..407933 (-) 552 WP_068562132.1 single-stranded DNA-binding protein Machinery gene
  ACKPCD_RS02245 (U2959_RS02235) rpsF 407972..408265 (-) 294 WP_068562131.1 30S ribosomal protein S6 -
  ACKPCD_RS02250 (U2959_RS02240) gyrA 408732..411362 (-) 2631 WP_068562130.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20140.84 Da        Isoelectric Point: 4.7621

>NTDB_id=1161413 ACKPCD_RS02240 WP_068562132.1 407382..407933(-) (ssb) [MAG: Trichococcus flocculiformis isolate 659e37ff-3402-4023-a990-0c9469b16b9d]
MINNVVLVGRLTKDVDLRYTSSGTAVGTFALAVNRQFTNQAGEREADFINCVMWRKSAENFANFTRKGSLVGITGRIQTR
NYDNQQGQRVYVTEVVADNFTLLESKTTTEQRPRETGAGSSNQAAPSANFGSSKSFESNQNQGQYNNQYSSPKQNGFSDF
NSTADPFSSNGESIDISDDDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1161413 ACKPCD_RS02240 WP_068562132.1 407382..407933(-) (ssb) [MAG: Trichococcus flocculiformis isolate 659e37ff-3402-4023-a990-0c9469b16b9d]
ATGATTAATAATGTTGTCTTAGTCGGCAGACTTACAAAAGATGTTGATTTACGCTATACATCCAGCGGCACAGCAGTCGG
AACCTTCGCTCTTGCAGTAAACAGACAGTTTACGAACCAAGCGGGAGAAAGAGAAGCTGACTTCATCAATTGTGTCATGT
GGAGAAAATCTGCAGAGAATTTCGCAAATTTCACTCGTAAAGGCTCTTTAGTCGGTATCACTGGCCGAATCCAAACAAGG
AATTATGATAATCAGCAAGGACAGCGCGTATACGTGACTGAAGTTGTTGCAGATAATTTCACATTGTTGGAATCGAAAAC
AACTACCGAACAAAGACCGAGAGAGACTGGCGCAGGTTCTTCAAATCAAGCAGCTCCGAGTGCAAACTTCGGATCAAGCA
AATCTTTTGAATCTAACCAAAACCAAGGACAGTATAATAATCAATACTCTTCTCCGAAACAAAACGGTTTTTCTGATTTT
AACTCAACTGCCGATCCGTTTTCATCAAACGGAGAATCAATTGACATTTCAGATGATGATTTGCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A847D5R2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

66.486

100

0.672
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.645

100

0.546
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.475

64.481

0.377

Multiple sequence alignment