Detailed information NTG1160730

Bioinformatically predicted

Overview

• Name: scnR
• Type: Regulator
• Locus tag: R2K04_RS03540
• Genome accession: NZ_OY731254
• Coordinates: 727595..728302 (+)
• Length: 235 a.a.
• NCBI ID: WP_009888460.1
• Uniprot ID: A0A9Q8EBL8
• Organism: Clostridioides difficile strain L-TCD-01
• Function: regulate comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 722595..733302

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R2K04_RS03515	cdd1	723390..723635 (+)	246	WP_021364306.1	protein Cdd1	-
R2K04_RS03520	-	723853..724122 (-)	270	WP_003426848.1	DUF3795 domain-containing protein	-
R2K04_RS03525	-	725000..725737 (-)	738	WP_003439186.1	ABC transporter permease	-
R2K04_RS03530	-	725749..726510 (-)	762	WP_021372951.1	ABC transporter permease	-
R2K04_RS03535	-	726510..727433 (-)	924	WP_170320070.1	ABC transporter ATP-binding protein	-
R2K04_RS03540	scnR	727595..728302 (+)	708	WP_009888460.1	response regulator transcription factor	Regulator
R2K04_RS03545	-	728347..729753 (+)	1407	WP_021364310.1	sensor histidine kinase	-
R2K04_RS03550	-	731552..731941 (+)	390	WP_003426867.1	BlaI/MecI/CopY family transcriptional regulator	-
R2K04_RS03555	-	732675..733145 (+)	471	WP_003439176.1	VOC family protein	-

Sequence

Protein

• Length: 235 a.a.
• Molecular weight: 26716.17 Da
• Isoelectric Point: 6.1467

>NTDB_id=1160730 R2K04_RS03540 WP_009888460.1 727595..728302(+) (scnR) [Clostridioides difficile strain L-TCD-01]
MESIKDKKILVVDDHKELLKMIDEILRKEGFSRVFLASSYEEAVRVFRNVKPDCAILDVVLPDGDGFSIMRKIRETSKIP
VIFLSARGEDEDRLIGLGLGADDYIVKPFLPKELTLRLVGILNRVYVPIEEEELPVFKLGDSVVVNLNSACVEKDGQEIS
LTAKEHSLLLKLYENKGRIVTNDSLCQAIWGDDMYGYENTLMVHVRRVREKIEKTPSTPKHLITVRGLGYKLMIN

Nucleotide

• Length: 708 bp

>NTDB_id=1160730 R2K04_RS03540 WP_009888460.1 727595..728302(+) (scnR) [Clostridioides difficile strain L-TCD-01]
ATGGAGTCAATAAAAGATAAAAAAATACTTGTGGTTGATGACCACAAGGAATTATTAAAAATGATAGATGAAATCCTGAG
AAAAGAGGGGTTTAGTAGAGTATTTTTAGCATCAAGTTATGAGGAAGCTGTTAGGGTATTTAGAAATGTAAAGCCAGATT
GTGCAATTTTAGATGTTGTATTGCCAGATGGAGATGGTTTTTCTATTATGAGAAAAATTAGAGAGACATCTAAAATACCA
GTGATTTTTCTCTCTGCAAGAGGTGAAGATGAAGATAGATTGATTGGTTTGGGCTTAGGGGCTGACGATTATATAGTAAA
GCCATTTTTACCAAAGGAACTTACTTTAAGGCTTGTGGGTATATTAAATCGTGTATATGTGCCTATAGAAGAAGAGGAGT
TGCCAGTATTTAAACTGGGAGATTCTGTTGTTGTGAATTTAAATAGTGCATGTGTTGAGAAAGATGGGCAAGAGATTTCT
TTAACAGCTAAAGAGCATTCGTTGCTTTTAAAGTTGTATGAAAATAAAGGGAGAATTGTTACTAATGATTCACTATGTCA
AGCCATTTGGGGAGATGATATGTATGGATATGAAAATACCCTTATGGTTCATGTTAGAAGGGTTAGAGAGAAGATAGAAA
AAACTCCATCTACACCTAAACATCTTATTACAGTAAGAGGTCTTGGATATAAGTTGATGATTAATTAA

Domains

Predicted by InterproScan.

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (156-232)

• Response regulator receiver domain (Response_reg) (9-117)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
scnR	Streptococcus mutans UA159	48.918	98.298	0.481
micA	Streptococcus pneumoniae Cp1015	40	100	0.4
vicR	Streptococcus mutans UA159	38.362	98.723	0.379