Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RCP16_RS18885 Genome accession   NZ_OY725677
Coordinates   4261918..4262427 (+) Length   169 a.a.
NCBI ID   WP_069326394.1    Uniprot ID   A0A1E3L702
Organism   Paenibacillus nuruki strain AASFL403 isolate AASFL403     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4256918..4267427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCP16_RS18850 (AASFL403_18970) - 4257119..4258291 (+) 1173 WP_308641028.1 aminotransferase class V-fold PLP-dependent enzyme -
  RCP16_RS18855 (AASFL403_18975) - 4258388..4258900 (+) 513 WP_308641029.1 DUF4446 family protein -
  RCP16_RS18860 (AASFL403_18980) - 4259068..4259319 (+) 252 WP_069326390.1 DUF3343 domain-containing protein -
  RCP16_RS18865 (AASFL403_18985) - 4259332..4260360 (+) 1029 WP_137224810.1 mechanosensitive ion channel family protein -
  RCP16_RS18870 (AASFL403_18990) - 4260467..4260685 (+) 219 WP_308641030.1 DUF951 domain-containing protein -
  RCP16_RS18880 (AASFL403_19000) rpsF 4261591..4261878 (+) 288 WP_069326393.1 30S ribosomal protein S6 -
  RCP16_RS18885 (AASFL403_19005) ssbA 4261918..4262427 (+) 510 WP_069326394.1 single-stranded DNA-binding protein Machinery gene
  RCP16_RS18890 (AASFL403_19010) rpsR 4262449..4262724 (+) 276 WP_069326395.1 30S ribosomal protein S18 -
  RCP16_RS18895 (AASFL403_19015) - 4262950..4263972 (+) 1023 WP_069326396.1 LCP family protein -
  RCP16_RS18900 (AASFL403_19020) - 4264141..4264599 (+) 459 WP_069326397.1 CBS domain-containing protein -
  RCP16_RS18905 (AASFL403_19025) - 4264696..4265643 (+) 948 WP_245703419.1 DUF2232 domain-containing protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18637.20 Da        Isoelectric Point: 4.7075

>NTDB_id=1160641 RCP16_RS18885 WP_069326394.1 4261918..4262427(+) (ssbA) [Paenibacillus nuruki strain AASFL403 isolate AASFL403]
MLNRVILIGRLTKDPELRYTPAGVAVTQFTLAVDRPFTSQGGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESNRDGGGSGGSSREESSNNTSNSGGGSNNRSNYNSNNGNNNSRDNQDPFSDDGKPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=1160641 RCP16_RS18885 WP_069326394.1 4261918..4262427(+) (ssbA) [Paenibacillus nuruki strain AASFL403 isolate AASFL403]
TTGCTAAACCGTGTCATTTTAATCGGCCGGTTAACCAAAGACCCGGAGCTTCGCTATACACCCGCTGGTGTAGCTGTAAC
CCAGTTCACATTAGCAGTGGATCGTCCTTTTACGAGCCAAGGTGGAGAGCGCGAAGCGGACTTTATCCCGGTCGTCACTT
GGAGACAACTGGCTGAAACTTGTGCTAACTATTTACGAAAAGGTCGCTTAACTGCGGTTGAAGGCCGAATTCAAGTACGT
AATTATGAGAATAATGAAGGAAAACGTGTATACGTGACTGAAGTTATAGCTGATAATGTTCGTTTCCTTGAGTCTAATCG
TGATGGTGGTGGCAGTGGAGGATCTTCCCGTGAAGAGTCTTCTAATAATACTAGCAATAGCGGCGGCGGTAGTAATAACC
GTAGCAACTATAATAGTAATAATGGAAACAACAACTCACGAGATAACCAGGACCCATTCTCTGATGACGGTAAACCGATA
GATATTTCCGATGATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E3L702

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.143

100

0.592
  ssb Latilactobacillus sakei subsp. sakei 23K

50

100

0.515
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.654

61.538

0.361

Multiple sequence alignment