Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACI6O7_RS05555 Genome accession   NZ_OY725152
Coordinates   1104829..1106151 (-) Length   440 a.a.
NCBI ID   WP_404379580.1    Uniprot ID   -
Organism   Lactococcus lactis strain IMDO WA12L8     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1099829..1111151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6O7_RS05525 (LLWA12L8_FAMOGCFE_01118) - 1100972..1101940 (+) 969 WP_404379576.1 PhoH family protein -
  ACI6O7_RS05530 (LLWA12L8_FAMOGCFE_01119) - 1101998..1102477 (+) 480 WP_003130650.1 NUDIX hydrolase -
  ACI6O7_RS05535 (LLWA12L8_FAMOGCFE_01120) ybeY 1102629..1103117 (+) 489 WP_003130652.1 rRNA maturation RNase YbeY -
  ACI6O7_RS05540 (LLWA12L8_FAMOGCFE_01121) - 1103101..1103556 (+) 456 WP_003130653.1 diacylglycerol kinase family protein -
  ACI6O7_RS05545 (LLWA12L8_FAMOGCFE_01122) - 1103570..1104148 (+) 579 WP_003130655.1 nucleotidyltransferase family protein -
  ACI6O7_RS05550 comFC 1104182..1104586 (-) 405 WP_003130657.1 ComF family protein Machinery gene
  ACI6O7_RS05555 (LLWA12L8_FAMOGCFE_01124) comFA 1104829..1106151 (-) 1323 WP_404379580.1 DEAD/DEAH box helicase Machinery gene
  ACI6O7_RS05560 (LLWA12L8_FAMOGCFE_01125) - 1106208..1106837 (+) 630 WP_003130660.1 YigZ family protein -
  ACI6O7_RS05565 (LLWA12L8_FAMOGCFE_01126) - 1106971..1107468 (+) 498 WP_404379582.1 VanZ family protein -
  ACI6O7_RS05570 (LLWA12L8_FAMOGCFE_01127) - 1107516..1108535 (+) 1020 WP_404379584.1 DUF475 domain-containing protein -
  ACI6O7_RS05575 (LLWA12L8_FAMOGCFE_01128) - 1108645..1109397 (+) 753 WP_404379586.1 bifunctional metallophosphatase/5'-nucleotidase -
  ACI6O7_RS05580 (LLWA12L8_FAMOGCFE_01129) glyQ 1109682..1110635 (+) 954 WP_003130667.1 glycine--tRNA ligase subunit alpha -

Sequence

Protein


Download         Length: 440 a.a.        Molecular weight: 50171.69 Da        Isoelectric Point: 10.1065

>NTDB_id=1160531 ACI6O7_RS05555 WP_404379580.1 1104829..1106151(-) (comFA) [Lactococcus lactis strain IMDO WA12L8]
MSTNQEKLFGRLLLKNDILQLIKSTDKISVSKIFSNFLLEAKVNPILGMTSISSNKIKCNRCGTVHIKNSVKLPIGVFYC
PSCIQLGRVRSDEFLYFLPQKNFPKKSYINWSGKLTENQKSISNALCQEINSHQQIIVQAVTGAGKTEMIYQVIEQILES
GGVVGLASPRIDVCLELHQRLSRDFSCKIPLLYHDGDNYFRAPLIIMTSHQLLRFKEAFDLLIIDEVDAFPFRDNEMLYV
AAEKARKIEGNLIYLTATSTDKLEKDIKKQKLYPLFLPRRFHNFPLVVPKFFWKNKFDKKLIEQRNSGFPLLIFAAEIEF
GQEFAKQLQLKFPKEKIASVASTTKDRLEIVKAFRNKEITILIATSILERGVTFPNVDVFVINSEHPNFTKSALIQMAGR
VGRSPERPTGLVSFFHYGKSKAMCQAVREIKKMNQLGGFS

Nucleotide


Download         Length: 1323 bp        

>NTDB_id=1160531 ACI6O7_RS05555 WP_404379580.1 1104829..1106151(-) (comFA) [Lactococcus lactis strain IMDO WA12L8]
ATGAGCACTAATCAAGAAAAGTTATTTGGCCGTTTATTATTAAAAAATGATATTTTACAACTTATAAAAAGTACTGACAA
GATTTCTGTCAGTAAAATTTTTAGTAATTTTTTGTTAGAAGCGAAGGTGAATCCAATTTTGGGAATGACTTCAATTTCTT
CAAATAAAATAAAATGCAACCGTTGTGGGACTGTTCATATAAAAAATTCTGTCAAACTTCCAATTGGTGTATTTTACTGT
CCAAGTTGTATTCAATTAGGTCGAGTCCGCTCCGATGAATTCTTGTACTTTCTGCCACAAAAGAATTTCCCAAAGAAATC
ATATATAAACTGGTCGGGAAAACTGACAGAGAATCAAAAATCAATTTCAAATGCCCTTTGTCAGGAAATTAATTCTCATC
AGCAAATAATTGTCCAAGCTGTGACTGGAGCTGGAAAAACTGAAATGATTTATCAAGTCATTGAGCAAATTTTAGAAAGC
GGTGGGGTTGTTGGTCTAGCTAGTCCAAGAATTGATGTTTGTCTTGAACTTCATCAGCGATTATCACGTGATTTTTCCTG
TAAGATTCCACTCTTATATCATGATGGCGACAACTATTTCCGAGCTCCATTAATAATAATGACCAGTCATCAGCTTTTAC
GTTTCAAGGAAGCTTTTGATTTGCTGATTATTGATGAAGTTGATGCCTTTCCCTTTAGAGATAATGAAATGCTTTATGTT
GCGGCAGAAAAAGCAAGAAAAATAGAAGGAAATTTAATATATTTGACCGCAACTTCTACTGACAAACTTGAAAAAGATAT
AAAAAAGCAAAAACTCTATCCTTTGTTTCTCCCGCGTCGTTTTCACAATTTCCCTTTAGTGGTGCCTAAATTTTTTTGGA
AAAATAAATTTGATAAGAAATTAATTGAGCAAAGAAATAGTGGCTTTCCTCTTCTTATTTTTGCTGCTGAAATTGAATTT
GGACAAGAATTTGCAAAACAACTACAATTGAAATTTCCTAAAGAAAAAATTGCTTCCGTTGCTTCAACAACAAAAGATAG
ATTGGAAATTGTTAAAGCTTTTAGAAATAAAGAAATTACTATTTTAATAGCGACATCAATTCTTGAACGGGGAGTCACTT
TTCCAAATGTTGATGTTTTTGTCATCAACAGTGAGCACCCAAACTTCACTAAATCCGCACTGATACAAATGGCTGGACGT
GTGGGTCGTAGTCCAGAACGTCCAACAGGCTTAGTTAGTTTTTTTCATTACGGAAAATCCAAAGCAATGTGTCAGGCAGT
TAGAGAAATCAAAAAAATGAACCAACTGGGAGGTTTTTCATGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(300-403)

Type III restriction enzyme, res subunit (ResIII)

(114-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Lactococcus lactis subsp. cremoris KW2

74.25

90.909

0.675
  comFA/cflA Streptococcus mitis SK321

52.01

90.455

0.47
  comFA/cflA Streptococcus pneumoniae Rx1

52.01

90.455

0.47
  comFA/cflA Streptococcus pneumoniae D39

52.01

90.455

0.47
  comFA/cflA Streptococcus pneumoniae R6

52.01

90.455

0.47
  comFA/cflA Streptococcus pneumoniae TIGR4

52.01

90.455

0.47
  comFA/cflA Streptococcus mitis NCTC 12261

51.256

90.455

0.464
  comFA Bacillus subtilis subsp. subtilis str. 168

37.029

100

0.38

Multiple sequence alignment