Detailed information    

insolico Bioinformatically predicted

Overview


Name   ciaH   Type   Regulator
Locus tag   OWO33_RS06000 Genome accession   NZ_OX461090
Coordinates   1144576..1145889 (-) Length   437 a.a.
NCBI ID   WP_000042577.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-336     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 1139576..1150889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OWO33_RS05980 - 1141056..1141829 (-) 774 WP_000622398.1 DUF3307 domain-containing protein -
  OWO33_RS05985 - 1141819..1142505 (-) 687 WP_000280308.1 SatD family protein -
  OWO33_RS05990 ffh 1142572..1144137 (-) 1566 WP_000863589.1 signal recognition particle protein -
  OWO33_RS05995 - 1144155..1144487 (-) 333 WP_000402075.1 putative DNA-binding protein -
  OWO33_RS06000 ciaH 1144576..1145889 (-) 1314 WP_000042577.1 HAMP domain-containing sensor histidine kinase Regulator
  OWO33_RS06005 ciaR 1145873..1146553 (-) 681 WP_000590620.1 response regulator transcription factor Regulator
  OWO33_RS06010 - 1146715..1149264 (-) 2550 WP_000859382.1 M1 family metallopeptidase -
  OWO33_RS06015 phoU 1149410..1150063 (-) 654 WP_000946330.1 phosphate signaling complex protein PhoU -
  OWO33_RS06020 pstB 1150097..1150855 (-) 759 WP_000193363.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence


Protein


Download         Length: 437 a.a.        Molecular weight: 49678.07 Da        Isoelectric Point: 9.3896

>NTDB_id=1159717 OWO33_RS06000 WP_000042577.1 1144576..1145889(-) (ciaH) [Streptococcus agalactiae isolate MRI Z2-336]
MSKPIKISKFKKNVSDSHFIHFFTVFSGIFLVMTVIILQVMRYGVYSSVDSSLKYISTHPKNYINMVMSRTAAYLDNSNI
ASVKLKPGGQTVANTDIILFTSEEEVINYFDAFSNYQFLKPNKKNLGGISELTLTNIFGQDETYHAVTVKVNNPAYPNVT
YMTAIVNIDQLVNAKERYEKIIIFVMTTFWIISIGASIYLAKWAQKPIIENYERQKAFVENASHELRTPLAVLQNRLETL
FRKPNATILENSENIASSLDEVRNMRILTTNLLNLARRDDGIKPELAVIKPTLFDSIFENYDLIAQENGKNFTGHNMIQD
SFKTDKTLLKQLMTILFDNAIKYTDNDGSIDFTISETDKYLFLEIADNGPGISEEDKVRIFDRFYRVDKARTRQQGGFGL
GLSLAQQIVNSLRGNITVIDNKPRGSIFKIKLPNLKG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=1159717 OWO33_RS06000 WP_000042577.1 1144576..1145889(-) (ciaH) [Streptococcus agalactiae isolate MRI Z2-336]
ATGTCGAAACCGATTAAGATAAGTAAATTCAAAAAAAATGTCTCAGATAGTCATTTTATCCATTTTTTCACAGTTTTTAG
TGGTATTTTTCTGGTTATGACTGTTATCATCCTCCAAGTCATGCGCTATGGTGTTTATTCTTCTGTTGATAGTAGTTTAA
AGTATATCAGTACCCATCCTAAAAATTACATCAATATGGTTATGTCACGTACTGCTGCCTACCTAGATAACTCCAATATC
GCAAGTGTCAAGTTAAAACCCGGCGGTCAGACAGTAGCTAATACTGATATTATTCTTTTTACATCAGAAGAAGAAGTCAT
TAACTATTTTGACGCATTTTCAAACTATCAGTTTTTAAAACCTAATAAAAAAAATCTAGGTGGCATTAGTGAATTAACTT
TAACCAACATCTTTGGTCAAGATGAGACATATCATGCTGTCACCGTAAAAGTTAATAACCCTGCTTATCCTAATGTGACT
TACATGACAGCTATTGTTAATATTGATCAATTAGTAAATGCTAAAGAACGCTATGAAAAAATTATTATATTTGTCATGAC
TACTTTTTGGATTATTTCAATTGGAGCAAGTATCTACTTAGCTAAATGGGCACAAAAACCGATTATAGAAAACTACGAAA
GACAGAAGGCTTTTGTCGAAAATGCTAGCCACGAGCTGCGTACTCCCCTAGCTGTCTTACAAAATCGCCTAGAAACGCTA
TTCAGAAAACCGAATGCCACCATTTTAGAAAATAGTGAAAATATCGCTTCAAGTCTAGATGAAGTACGAAATATGCGTAT
TTTAACCACTAATCTTTTAAACTTAGCAAGACGTGATGATGGAATCAAACCAGAATTAGCTGTTATTAAGCCTACACTTT
TTGATAGTATCTTTGAGAATTATGATCTAATCGCCCAAGAGAATGGTAAAAATTTTACTGGACATAATATGATCCAAGAT
AGTTTCAAAACAGATAAGACACTGCTAAAACAACTCATGACTATTTTATTTGATAATGCTATAAAATATACTGACAATGA
TGGTAGCATTGACTTTACCATATCTGAAACTGATAAGTATCTCTTTTTAGAAATCGCTGATAATGGACCAGGAATTTCAG
AGGAGGATAAAGTCAGAATTTTTGATCGTTTTTACCGTGTTGACAAAGCAAGAACACGACAACAAGGAGGGTTTGGCCTC
GGCCTTTCTTTAGCTCAACAAATCGTTAACTCACTGCGAGGTAATATTACAGTAATTGATAATAAACCTAGAGGCAGTAT
TTTTAAGATAAAACTACCAAATTTAAAAGGTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

60.373

98.169

0.593

  ciaH Streptococcus pneumoniae Rx1

52.143

96.11

0.501

  ciaH Streptococcus pneumoniae D39

52.143

96.11

0.501

  ciaH Streptococcus pneumoniae R6

52.143

96.11

0.501

  ciaH Streptococcus pneumoniae TIGR4

52.143

96.11

0.501


Multiple sequence alignment