Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QOS94_RS00040 Genome accession   NZ_OX460976
Coordinates   9628..10182 (+) Length   184 a.a.
NCBI ID   WP_229251496.1    Uniprot ID   -
Organism   Carnobacterium maltaromaticum strain SF2022 isolate SF2022     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4628..15182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOS94_RS00030 gyrA 6485..9034 (+) 2550 WP_015075095.1 DNA gyrase subunit A -
  QOS94_RS00035 rpsF 9278..9577 (+) 300 WP_010052328.1 30S ribosomal protein S6 -
  QOS94_RS00040 ssb 9628..10182 (+) 555 WP_229251496.1 single-stranded DNA-binding protein Machinery gene
  QOS94_RS00045 rpsR 10212..10448 (+) 237 WP_010052333.1 30S ribosomal protein S18 -
  QOS94_RS00050 - 10680..12683 (+) 2004 WP_229251497.1 DHH family phosphoesterase -
  QOS94_RS00055 rplI 12684..13139 (+) 456 WP_010052338.1 50S ribosomal protein L9 -
  QOS94_RS00060 - 13268..14659 (-) 1392 WP_229251499.1 O-antigen ligase family protein -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20147.71 Da        Isoelectric Point: 5.2339

>NTDB_id=1159487 QOS94_RS00040 WP_229251496.1 9628..10182(+) (ssb) [Carnobacterium maltaromaticum strain SF2022 isolate SF2022]
MINRVVLVGRLTKDADLRYTSSGTAVASFTVAVNRQFTNQSGEREADFINCVAWRKTAETLANFTRKGSLVGVEGRIQTR
SYDNQQGQRVYVTEVVVDTFSMLESKSTNEQRQSHDTSGGSNGGATSPSKPSQQSGGYQQNSYNSNANNQSSAPQQQYQN
SNRNEDPFASSGQPIDISDDDLPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=1159487 QOS94_RS00040 WP_229251496.1 9628..10182(+) (ssb) [Carnobacterium maltaromaticum strain SF2022 isolate SF2022]
ATGATTAACAGAGTTGTTTTAGTTGGAAGATTAACAAAAGATGCAGATTTACGATATACTTCTAGTGGTACAGCCGTTGC
TTCTTTTACTGTGGCAGTCAATAGACAGTTTACAAACCAGAGTGGGGAACGCGAAGCTGATTTTATCAACTGTGTAGCAT
GGAGAAAAACTGCTGAAACACTTGCTAATTTTACACGCAAAGGGTCTTTAGTTGGAGTGGAAGGTCGTATTCAAACACGG
TCTTACGATAACCAACAAGGGCAACGTGTTTATGTTACTGAGGTGGTTGTTGATACGTTCTCAATGCTTGAGTCAAAATC
AACAAATGAGCAACGTCAAAGTCATGATACAAGTGGTGGTAGTAATGGTGGGGCAACTAGTCCTTCTAAACCTTCACAAC
AATCAGGTGGCTATCAACAAAATTCTTATAACAGCAACGCAAATAATCAATCTTCAGCTCCTCAACAACAATATCAAAAT
TCCAATCGGAATGAGGATCCATTTGCTTCAAGTGGACAACCTATTGATATCTCAGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

63.102

100

0.641
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.978

100

0.56
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

57.609

0.375

Multiple sequence alignment