Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QOS64_RS18360 Genome accession   NZ_OX460973
Coordinates   3657845..3658534 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain SAF3325 substr. 0 isolate SAF3325     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3652845..3663534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOS64_RS18325 - 3653043..3653525 (-) 483 WP_003151394.1 flagellar protein FlgN -
  QOS64_RS18330 flgM 3653540..3653806 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  QOS64_RS18335 - 3653876..3654295 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  QOS64_RS18340 comFC 3654369..3655058 (-) 690 WP_219152091.1 phosphoribosyltransferase family protein Machinery gene
  QOS64_RS18345 - 3655064..3655348 (-) 285 WP_007407481.1 competence protein ComFB -
  QOS64_RS18350 comFA 3655406..3656791 (-) 1386 WP_168984791.1 DEAD/DEAH box helicase Machinery gene
  QOS64_RS18355 - 3656899..3657747 (-) 849 WP_007614105.1 DegV family protein -
  QOS64_RS18360 degU 3657845..3658534 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QOS64_RS18365 degS 3658611..3659774 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  QOS64_RS18370 - 3659997..3660644 (+) 648 WP_007614107.1 YigZ family protein -
  QOS64_RS18375 - 3660649..3661830 (+) 1182 WP_168984790.1 LCP family protein -
  QOS64_RS18380 - 3661929..3663005 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1159476 QOS64_RS18360 WP_003219701.1 3657845..3658534(-) (degU) [Bacillus velezensis strain SAF3325 substr. 0 isolate SAF3325]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1159476 QOS64_RS18360 WP_003219701.1 3657845..3658534(-) (degU) [Bacillus velezensis strain SAF3325 substr. 0 isolate SAF3325]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACCCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment