Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QOS64_RS18340 Genome accession   NZ_OX460973
Coordinates   3654369..3655058 (-) Length   229 a.a.
NCBI ID   WP_219152091.1    Uniprot ID   -
Organism   Bacillus velezensis strain SAF3325 substr. 0 isolate SAF3325     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3649369..3660058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOS64_RS18305 fliW 3649460..3649891 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  QOS64_RS18310 - 3649921..3650490 (-) 570 WP_032867077.1 DUF6470 family protein -
  QOS64_RS18315 flgL 3650581..3651498 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  QOS64_RS18320 flgK 3651510..3653027 (-) 1518 WP_007407478.1 flagellar hook-associated protein FlgK -
  QOS64_RS18325 - 3653043..3653525 (-) 483 WP_003151394.1 flagellar protein FlgN -
  QOS64_RS18330 flgM 3653540..3653806 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  QOS64_RS18335 - 3653876..3654295 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  QOS64_RS18340 comFC 3654369..3655058 (-) 690 WP_219152091.1 phosphoribosyltransferase family protein Machinery gene
  QOS64_RS18345 - 3655064..3655348 (-) 285 WP_007407481.1 competence protein ComFB -
  QOS64_RS18350 comFA 3655406..3656791 (-) 1386 WP_168984791.1 DEAD/DEAH box helicase Machinery gene
  QOS64_RS18355 - 3656899..3657747 (-) 849 WP_007614105.1 DegV family protein -
  QOS64_RS18360 degU 3657845..3658534 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QOS64_RS18365 degS 3658611..3659774 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25333.92 Da        Isoelectric Point: 8.2927

>NTDB_id=1159474 QOS64_RS18340 WP_219152091.1 3654369..3655058(-) (comFC) [Bacillus velezensis strain SAF3325 substr. 0 isolate SAF3325]
MNCLLCDSPISSSLTWRSLFSLAPEQEMCNICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFSAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSEMLASLLGRPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1159474 QOS64_RS18340 WP_219152091.1 3654369..3655058(-) (comFC) [Bacillus velezensis strain SAF3325 substr. 0 isolate SAF3325]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCACCCGAGCAAGA
GATGTGCAACATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTTCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGATGCTGGCCTCTCTGCTCGGAAGGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment