Detailed information    

insolico Bioinformatically predicted

Overview


Name   ciaH   Type   Regulator
Locus tag   QOR61_RS05860 Genome accession   NZ_OX460960
Coordinates   1116566..1117879 (-) Length   437 a.a.
NCBI ID   WP_283572468.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-299     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 1111566..1122879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR61_RS05840 - 1113045..1113818 (-) 774 WP_000622398.1 DUF3307 domain-containing protein -
  QOR61_RS05845 - 1113808..1114494 (-) 687 WP_000280308.1 SatD family protein -
  QOR61_RS05850 ffh 1114561..1116126 (-) 1566 WP_283572467.1 signal recognition particle protein -
  QOR61_RS05855 - 1116144..1116476 (-) 333 WP_000402075.1 putative DNA-binding protein -
  QOR61_RS05860 ciaH 1116566..1117879 (-) 1314 WP_283572468.1 HAMP domain-containing sensor histidine kinase Regulator
  QOR61_RS05865 ciaR 1117863..1118543 (-) 681 WP_000590620.1 response regulator transcription factor Regulator
  QOR61_RS05870 - 1118705..1121254 (-) 2550 WP_000859376.1 M1 family metallopeptidase -
  QOR61_RS05875 phoU 1121400..1122053 (-) 654 WP_000946330.1 phosphate signaling complex protein PhoU -
  QOR61_RS05880 pstB 1122087..1122845 (-) 759 WP_000193362.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence


Protein


Download         Length: 437 a.a.        Molecular weight: 49664.09 Da        Isoelectric Point: 9.4961

>NTDB_id=1159321 QOR61_RS05860 WP_283572468.1 1116566..1117879(-) (ciaH) [Streptococcus agalactiae isolate MRI Z2-299]
MSKPIKISKFKKNVSDSHFIHFFTVFSGIFLVMTVIILQVMRYGVYSSVDSSLKYISTHPKNYINMVMSRTAAYLDNSNI
ASVKLKPGGQTVANTDIILFTSEEEVINYFDAFSNYQFLKPNKKNLGGISELTLTNIFGQDETYHAVTVKVNNPAYPNVT
YMTAIVNIDQLVNAKERYEKIIIFVMTSFWIISIGASIYLAKWAQKPIIENYERQKAFVENASHELRTPLAVLQNRLETL
FRKPNATILENSENIASSLDEVRNMRILTTNLLNLARRDDGIKPELAVIKPTLFDSIFENYDLIAQENGKNFTGHNMIQD
SFKTDKTLLKQLMTILFDNAIKYTDNDGSIDFTISETDKYLFLEIADNGPGISEEDKVRIFDRFYRVDKARTRQQGGFGL
GLSLAQQIVNSLRGNITVIDNKPRGSIFKIKLPKVKG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=1159321 QOR61_RS05860 WP_283572468.1 1116566..1117879(-) (ciaH) [Streptococcus agalactiae isolate MRI Z2-299]
ATGTCGAAACCGATTAAGATAAGTAAATTCAAAAAAAATGTCTCAGATAGTCATTTTATCCATTTTTTCACAGTTTTTAG
TGGTATTTTTCTGGTTATGACTGTTATCATCCTCCAAGTCATGCGCTATGGTGTTTATTCTTCTGTTGATAGTAGTTTAA
AGTATATCAGTACCCATCCTAAAAATTACATCAATATGGTTATGTCACGTACTGCTGCCTACCTAGATAACTCCAATATC
GCAAGTGTCAAGTTAAAACCCGGCGGTCAGACAGTAGCTAATACTGATATTATTCTTTTTACATCAGAAGAAGAAGTCAT
TAACTATTTTGACGCATTTTCAAACTATCAGTTTTTAAAACCTAATAAAAAAAATCTAGGTGGCATTAGTGAATTAACTT
TAACCAACATTTTTGGTCAAGATGAGACATATCATGCTGTCACCGTAAAAGTTAATAACCCTGCTTATCCTAATGTGACT
TACATGACAGCTATTGTTAATATTGATCAATTAGTAAATGCTAAAGAACGCTATGAAAAAATTATTATATTTGTCATGAC
TTCTTTTTGGATTATTTCAATTGGAGCAAGTATCTACTTAGCTAAATGGGCACAAAAACCGATTATAGAAAACTACGAAA
GACAGAAGGCTTTTGTCGAAAATGCTAGCCACGAGCTGCGTACTCCCCTAGCTGTCTTACAAAATCGCCTAGAAACGCTA
TTCAGAAAACCGAATGCCACCATTTTAGAAAATAGTGAAAATATCGCTTCAAGTCTAGATGAAGTACGAAATATGCGTAT
TTTAACCACTAATCTTTTAAACTTAGCAAGACGTGATGATGGAATCAAACCAGAATTAGCTGTTATTAAGCCTACACTTT
TTGATAGTATCTTTGAGAATTATGATCTAATCGCCCAAGAGAATGGTAAAAATTTTACTGGACATAATATGATTCAAGAT
AGTTTCAAAACAGATAAGACACTGCTAAAACAACTCATGACTATTTTATTTGATAATGCTATAAAATATACTGACAATGA
TGGTAGCATTGACTTTACCATATCTGAAACTGATAAGTATCTCTTTTTAGAAATCGCTGATAATGGACCAGGAATTTCAG
AGGAGGATAAAGTCAGAATTTTTGATCGTTTTTACCGTGTTGACAAAGCAAGAACACGACAACAAGGAGGATTTGGCCTC
GGCCTTTCTTTAGCTCAACAAATCGTTAACTCACTGCGAGGTAATATTACAGTAATTGATAATAAACCTAGAGGCAGTAT
TTTTAAGATAAAACTACCAAAAGTAAAAGGTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

60.373

98.169

0.593

  ciaH Streptococcus pneumoniae Rx1

52.381

96.11

0.503

  ciaH Streptococcus pneumoniae D39

52.381

96.11

0.503

  ciaH Streptococcus pneumoniae R6

52.381

96.11

0.503

  ciaH Streptococcus pneumoniae TIGR4

52.381

96.11

0.503


Multiple sequence alignment