Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   RG34_RS15725 Genome accession   NZ_CP010134
Coordinates   3042972..3043604 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain D1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3037972..3048604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG34_RS15700 (RG34_14745) yhfG 3038104..3038271 (+) 168 WP_000736860.1 YhfG family protein -
  RG34_RS15705 (RG34_14750) fic 3038261..3038863 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  RG34_RS15710 (RG34_14755) pabA 3038895..3039458 (+) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  RG34_RS15715 (RG34_14760) argD 3039544..3040764 (+) 1221 WP_000963785.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  RG34_RS15720 (RG34_14765) yhfK 3040831..3042921 (-) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  RG34_RS15725 (RG34_14770) crp 3042972..3043604 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  RG34_RS15735 (RG34_14780) yhfA 3043906..3044310 (+) 405 WP_001148908.1 OsmC family protein -
  RG34_RS15740 (RG34_14785) prkB 3044365..3045234 (-) 870 WP_001274680.1 phosphoribulokinase -
  RG34_RS15745 (RG34_14790) yheU 3045288..3045506 (-) 219 WP_000907085.1 YheU family protein -
  RG34_RS15750 (RG34_14795) yheT 3045500..3046521 (-) 1022 Protein_2824 hydrolase -
  RG34_RS15755 (RG34_14800) yheS 3046521..3048434 (-) 1914 WP_000634798.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=115860 RG34_RS15725 WP_000242755.1 3042972..3043604(-) (crp) [Escherichia coli strain D1]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=115860 RG34_RS15725 WP_000242755.1 3042972..3043604(-) (crp) [Escherichia coli strain D1]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467