Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QWJ11_RS09275 Genome accession   NZ_OX458335
Coordinates   1930971..1931687 (+) Length   238 a.a.
NCBI ID   WP_007245835.1    Uniprot ID   A0A2G7MEY6
Organism   Pseudomonas syringae pv. tomato strain DAPP-PG 215 isolate IPVPG 215     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1925971..1936687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWJ11_RS09260 (DAPPPG215_09320) - 1926445..1927656 (-) 1212 WP_007245832.1 hypothetical protein -
  QWJ11_RS09265 (DAPPPG215_09325) tssI 1927808..1928473 (-) 666 Protein_1824 type VI secretion system tip protein TssI/VgrG -
  QWJ11_RS09270 (DAPPPG215_09330) comA 1928711..1930927 (+) 2217 WP_007245834.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QWJ11_RS09275 (DAPPPG215_09335) exbB 1930971..1931687 (+) 717 WP_007245835.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QWJ11_RS09280 (DAPPPG215_09340) - 1931684..1932115 (+) 432 WP_003381117.1 biopolymer transporter ExbD -
  QWJ11_RS09285 (DAPPPG215_09345) lpxK 1932115..1933110 (+) 996 WP_005770644.1 tetraacyldisaccharide 4'-kinase -
  QWJ11_RS09290 (DAPPPG215_09350) - 1933128..1933313 (+) 186 WP_003381112.1 Trm112 family protein -
  QWJ11_RS09295 (DAPPPG215_09355) kdsB 1933310..1934074 (+) 765 WP_005770642.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QWJ11_RS09300 (DAPPPG215_09360) murB 1934109..1935128 (+) 1020 WP_007245837.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25863.42 Da        Isoelectric Point: 7.9105

>NTDB_id=1158498 QWJ11_RS09275 WP_007245835.1 1930971..1931687(+) (exbB) [Pseudomonas syringae pv. tomato strain DAPP-PG 215 isolate IPVPG 215]
MIEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRIAPPHLLGQAWQWIQEKKLDNEKLKQLRAD
SPLGEILAAGLANSKHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIEIFGSFNSTGATANAGV
LASGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGSKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1158498 QWJ11_RS09275 WP_007245835.1 1930971..1931687(+) (exbB) [Pseudomonas syringae pv. tomato strain DAPP-PG 215 isolate IPVPG 215]
ATGATAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCGGGTGGCTGGATGATGCTGCC
GATCATTTTGAGCTCCATCGCCGCTGCCGGCATTATCATCGAACGCCTGTGGACCCTGCGCGCCAGCCGCATCGCGCCGC
CGCACCTGCTGGGTCAGGCGTGGCAGTGGATTCAGGAAAAGAAACTCGATAACGAAAAGCTCAAGCAGTTGCGCGCCGAC
TCGCCGCTGGGCGAAATCCTTGCCGCTGGCCTGGCCAATTCCAAGCATGGTCGCGAGATCATGAAAGAATGCATCGAAGA
AGCCGCCGCCCGTGTCATCCATGACCTGGAGCGCTACCTGAGCGCGCTGGGCTCTATCGCCGCGATGGCCCCGTTGCTCG
GTCTGCTCGGGACGGTGCTGGGCATGATCGAGATCTTCGGTTCGTTCAACAGCACCGGTGCAACGGCCAATGCCGGTGTG
CTGGCGAGCGGTATCTCCAAGGCACTGATCTGTACCGCATCGGGCCTTATCGTCGCGATCCCGGCGATCTTCTTTCACCG
CTTTCTGCAAAGCCGTGTCGATGAACTGGTGGTCGGCATGGAGCAGCAGGCGATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGTGATGTCGATCTGATCGACGCCAAGATCGACCTCAAATCGCTGGCCAGGGCAGGCGGGAGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G7MEY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.571

88.235

0.693

Multiple sequence alignment