Detailed information NTG1158497

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: QWJ11_RS09270
• Genome accession: NZ_OX458335
• Coordinates: 1928711..1930927 (+)
• Length: 738 a.a.
• NCBI ID: WP_007245834.1
• Uniprot ID: A0AAW4DU14
• Organism: Pseudomonas syringae pv. tomato strain DAPP-PG 215 isolate IPVPG 215
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1923711..1935927

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QWJ11_RS09245 (DAPPPG215_09305)	-	1923798..1924730 (+)	933	WP_005619741.1	ABC transporter ATP-binding protein	-
QWJ11_RS09250 (DAPPPG215_09310)	-	1924727..1925515 (+)	789	WP_005770650.1	ABC transporter permease	-
QWJ11_RS09255 (DAPPPG215_09315)	-	1925549..1926448 (-)	900	WP_007245831.1	DUF6708 domain-containing protein	-
QWJ11_RS09260 (DAPPPG215_09320)	-	1926445..1927656 (-)	1212	WP_007245832.1	hypothetical protein	-
QWJ11_RS09265 (DAPPPG215_09325)	tssI	1927808..1928473 (-)	666	Protein_1824	type VI secretion system tip protein TssI/VgrG	-
QWJ11_RS09270 (DAPPPG215_09330)	comA	1928711..1930927 (+)	2217	WP_007245834.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
QWJ11_RS09275 (DAPPPG215_09335)	exbB	1930971..1931687 (+)	717	WP_007245835.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
QWJ11_RS09280 (DAPPPG215_09340)	-	1931684..1932115 (+)	432	WP_003381117.1	biopolymer transporter ExbD	-
QWJ11_RS09285 (DAPPPG215_09345)	lpxK	1932115..1933110 (+)	996	WP_005770644.1	tetraacyldisaccharide 4'-kinase	-
QWJ11_RS09290 (DAPPPG215_09350)	-	1933128..1933313 (+)	186	WP_003381112.1	Trm112 family protein	-
QWJ11_RS09295 (DAPPPG215_09355)	kdsB	1933310..1934074 (+)	765	WP_005770642.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
QWJ11_RS09300 (DAPPPG215_09360)	murB	1934109..1935128 (+)	1020	WP_007245837.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 738 a.a.
• Molecular weight: 80716.10 Da
• Isoelectric Point: 10.7615

>NTDB_id=1158497 QWJ11_RS09270 WP_007245834.1 1928711..1930927(+) (comA) [Pseudomonas syringae pv. tomato strain DAPP-PG 215 isolate IPVPG 215]
MRSGMIALALGLVALRFLPVLPPIWLLLLMPILALMLLPFRTYPLALFLLGFTWACVSAQWALKDRLQQRLDGQTLWLQG
KVAGLPSVAEGVVRFELEHATSRRAKLPALIRVAWYGGPEVRSGERWRLAVKLKRPGGLVNPDAFDYQAWLLAQRIGATG
TVVDGRRLAPAHAAWRDGIRQRLLAVDAQGREGGLAALVLGDGSGLSSGDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRALPWLPSACALAFIAALGYGLLAGFEVPVRRACVMVGMVLLWRLRFRHLGVVWPFLLSFNAVLIVEPL
VTLQPGFWLSFAAVGILVLIFSGRLGTWSWWQSWTRAQWLIALGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
IGTLLLPVPVVGEGLLWLAGGALQWLFVFLGWVAEALPAWLPSAVPGWAWLLSLLGAFVLLLPKGVPLRLLGWPLLLLCV
FPPLKSVPMGQVEVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKSGVRHLDLMLISHADADHAGGA
AAVHRAFPVNRVLGGELTRLAPQLDARLCENNERWEWDGVVFSTWRWEQAPNGNAGSCMLSVDAGGERLLLTGDIDVHAE
RAAMDSGFDLRAHWLQAPHHGSRSSSSKRFLQAVAPLGVLISRGQNNAFGHPHPLVMSRYRWLGITHHDSAELGAISLQL
GAFGQPRAERAQRRFWRD

Nucleotide

• Length: 2217 bp

>NTDB_id=1158497 QWJ11_RS09270 WP_007245834.1 1928711..1930927(+) (comA) [Pseudomonas syringae pv. tomato strain DAPP-PG 215 isolate IPVPG 215]
ATGCGCTCAGGGATGATCGCGCTCGCGTTGGGGCTGGTGGCCCTGCGCTTTCTGCCGGTTTTGCCGCCGATCTGGCTCTT
GTTGCTGATGCCGATACTGGCGTTGATGCTGCTGCCGTTTCGCACCTATCCACTGGCGCTGTTCCTGCTCGGCTTCACGT
GGGCGTGCGTTTCGGCGCAGTGGGCGTTGAAAGACCGTTTGCAGCAACGGCTGGACGGCCAGACACTGTGGCTGCAAGGC
AAAGTGGCCGGTTTGCCGAGCGTTGCCGAGGGCGTGGTGCGTTTCGAGCTGGAACACGCCACGTCGCGGCGGGCGAAGCT
GCCTGCACTGATCCGTGTGGCGTGGTACGGCGGCCCTGAGGTGCGCAGCGGCGAGCGCTGGCGACTGGCGGTAAAGCTCA
AGCGCCCCGGCGGGCTGGTCAACCCTGATGCTTTCGATTATCAGGCCTGGCTGCTGGCCCAGCGTATCGGCGCGACCGGT
ACGGTGGTGGACGGTCGAAGGCTGGCGCCCGCGCATGCGGCCTGGCGCGACGGTATTCGTCAGCGTTTGCTGGCGGTTGA
TGCACAGGGCAGGGAAGGCGGGCTGGCCGCGCTGGTGCTGGGCGATGGCTCGGGGTTGTCGAGTGGCGACTGGCAGGTGC
TGCAAGACACCGGCACCGTGCACCTGCTGGTGATTTCCGGGCAGCACATCGGTTTGCTTGCTGGCGTTATTTACGCGCTG
GTCGCAGGTCTCGCCCGCTGGGGACTGTGGCCACGGGCTTTGCCCTGGCTGCCCTCGGCCTGTGCGCTGGCGTTCATTGC
TGCGCTGGGCTACGGATTGCTGGCCGGGTTCGAGGTGCCGGTGCGGCGCGCCTGTGTGATGGTCGGCATGGTCTTGCTGT
GGCGTTTGCGCTTTCGGCATCTGGGCGTGGTCTGGCCGTTTTTGCTTTCCTTCAACGCGGTGCTGATCGTTGAGCCGTTG
GTGACGTTGCAGCCGGGTTTCTGGCTGTCTTTTGCAGCGGTCGGCATTCTGGTACTGATTTTCAGCGGCCGTCTGGGCAC
CTGGAGCTGGTGGCAGAGCTGGACTCGCGCGCAGTGGCTGATCGCTCTTGGCCTGCTGCCTATTCTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGCCCGTTTGCCAACCTGCTCGCGGTGCCTTGGGTCAGTGTGATCGTCCTGCCGCCAGCACTG
ATCGGCACGTTGCTGCTGCCGGTCCCCGTTGTTGGCGAGGGCCTGCTCTGGCTGGCGGGAGGCGCGCTGCAATGGCTGTT
CGTGTTTCTCGGTTGGGTGGCCGAGGCCTTGCCCGCCTGGCTGCCCAGTGCGGTGCCTGGCTGGGCATGGCTGTTGAGTC
TGCTCGGGGCCTTTGTTTTATTGCTGCCCAAAGGTGTGCCGCTGCGCCTGTTGGGCTGGCCATTGTTGTTGCTGTGCGTG
TTTCCGCCGCTCAAGTCTGTGCCCATGGGGCAGGTCGAGGTGTTGCAACTGGACGTGGGGCAGGGGCTGGCGATTCTGCT
GCGCACCCGCAATCACACACTGCTCTACGATGCAGGGCCGCGTTTCGGTGAGTTCGATATCGGCCAACGGGTGGTCGTGC
CGGCGATGCGCAAGTCCGGTGTTCGTCACTTGGATCTGATGCTGATCAGCCATGCCGATGCGGATCATGCCGGCGGTGCG
GCAGCGGTTCATCGGGCATTTCCGGTGAACCGCGTGCTGGGCGGGGAACTGACCCGGCTCGCCCCGCAACTCGATGCCCG
GCTGTGTGAGAACAACGAGCGCTGGGAATGGGATGGCGTGGTGTTTTCCACCTGGCGCTGGGAGCAGGCGCCCAACGGTA
ATGCCGGGTCCTGCATGCTGAGCGTCGACGCCGGTGGTGAGCGTCTACTGCTGACGGGCGACATTGATGTGCACGCCGAG
CGTGCGGCAATGGACAGCGGTTTTGACCTTCGTGCTCACTGGTTGCAAGCCCCGCATCACGGCAGCCGCAGCTCATCGTC
CAAACGGTTTCTGCAGGCGGTTGCGCCGCTGGGCGTGCTCATTTCCCGCGGGCAGAACAATGCCTTCGGTCATCCGCATC
CGTTGGTCATGTCGCGGTACCGATGGTTGGGAATTACCCACCATGACAGCGCCGAACTAGGTGCCATCAGTCTGCAACTG
GGGGCGTTCGGCCAGCCTCGGGCGGAACGGGCGCAGCGGCGTTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (22-166)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-675)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.827	97.019	0.619
comA	Ralstonia pseudosolanacearum GMI1000	32.619	100	0.371