Detailed information NTG1158359

Bioinformatically predicted

Overview

• Name: ctsF
• Type: Machinery gene
• Locus tag: P4E82_RS01645
• Genome accession: NZ_OX442413
• Coordinates: 331649..332824 (+)
• Length: 391 a.a.
• NCBI ID: WP_002781160.1
• Uniprot ID: A0A0Q2ISE7
• Organism: Campylobacter coli isolate pure strain
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 326649..337824

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P4E82_RS01620	ctsR	327218..327529 (+)	312	WP_002779316.1	hypothetical protein	Machinery gene
P4E82_RS01625	ctsD	327507..328925 (+)	1419	WP_002779315.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
P4E82_RS01630	ctsP	328918..329514 (+)	597	WP_002779314.1	ATP-binding protein	Machinery gene
P4E82_RS01635	-	329511..330107 (+)	597	WP_002779313.1	CDC27 family protein	-
P4E82_RS01640	ctsE	330100..331662 (+)	1563	WP_002779312.1	GspE/PulE family protein	Machinery gene
P4E82_RS01645	ctsF	331649..332824 (+)	1176	WP_002781160.1	type II secretion system F family protein	Machinery gene
P4E82_RS01650	-	332821..333585 (-)	765	WP_002781157.1	TSUP family transporter	-
P4E82_RS01655	-	333588..334351 (-)	764	Protein_320	TIGR02757 family protein	-
P4E82_RS01660	flgK	334368..336194 (-)	1827	WP_002784059.1	flagellar hook-associated protein FlgK	-
P4E82_RS01665	-	336204..336638 (-)	435	WP_002779263.1	flagellar protein FlgN	-
P4E82_RS01670	flgM	336681..336878 (-)	198	WP_002779262.1	flagellar biosynthesis anti-sigma factor FlgM	-
P4E82_RS01675	-	336941..337282 (-)	342	WP_002784057.1	hypothetical protein	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 45518.35 Da
• Isoelectric Point: 9.4461

>NTDB_id=1158359 P4E82_RS01645 WP_002781160.1 331649..332824(+) (ctsF) [Campylobacter coli isolate pure strain]
MKLYELEIKGKTKQTKHLRAKNLNEAQAKAIAKKWEILNIKEIQKASFKRLDDARFILFFQELSLLCEVGISIKDALKEL
DKIYSHKMIAKLCDNLNLGQNLSLAFENANFGLTHAELALIKTSQNTGKLSEIFMQISRLRQNNVENEQRVKKALRYPLI
VFLSVCAAFVLLMLFVVPNFKDLFEDLNLALPFITELIIYIYNFLDKYILLVFCLIALILFLTLFLYRKYYFFSYFCDSL
LLKLPLLSKFIIYQQNYSFFMIFSLLLKSGISLLEAFKLATLALNNKKVLLYYQEIRTFMDSGLEISHAFKKVDLFDPLV
FSMLSIAMKSSKLEFLSEEIAKYYKNKSENLMDKFLSFLEPIMTLWVAILVLFLALGIFLPIWELSSGVNF

Nucleotide

• Length: 1176 bp

>NTDB_id=1158359 P4E82_RS01645 WP_002781160.1 331649..332824(+) (ctsF) [Campylobacter coli isolate pure strain]
ATGAAGCTTTATGAGCTCGAGATTAAAGGCAAAACAAAACAGACAAAGCATTTAAGGGCTAAAAATTTAAACGAAGCTCA
AGCAAAAGCTATCGCTAAAAAATGGGAAATTTTAAATATCAAAGAGATACAAAAAGCAAGTTTTAAAAGATTAGATGATG
CAAGATTTATCCTTTTCTTTCAAGAATTATCTTTGCTTTGCGAAGTAGGAATCAGCATAAAAGATGCTTTAAAGGAGCTT
GATAAAATATATTCTCACAAGATGATTGCCAAGCTTTGCGATAATTTAAATTTAGGACAAAATTTAAGCCTTGCTTTTGA
AAATGCAAATTTTGGGCTTACTCATGCGGAATTAGCCCTTATTAAAACTTCCCAAAACACAGGAAAATTAAGTGAAATTT
TCATGCAAATTTCAAGATTAAGACAAAATAATGTAGAAAATGAACAAAGAGTCAAAAAAGCTTTAAGATATCCTTTGATT
GTTTTTTTAAGTGTGTGCGCGGCTTTTGTTTTACTCATGCTTTTTGTTGTGCCTAATTTTAAAGATTTATTTGAGGATTT
AAATTTAGCCTTACCCTTTATAACCGAGCTTATAATTTATATTTATAATTTTTTGGATAAGTATATTTTGCTTGTGTTTT
GTTTGATCGCACTTATTTTATTTCTTACTTTATTTTTGTATAGAAAATATTATTTCTTTTCATATTTTTGCGATAGCTTG
CTTTTAAAACTTCCTTTGTTATCTAAATTTATTATTTATCAGCAAAATTATTCTTTTTTTATGATTTTCTCTTTACTTTT
AAAAAGCGGCATTTCTCTTTTGGAAGCTTTTAAATTAGCCACTTTGGCCTTAAATAATAAAAAGGTATTATTGTATTATC
AAGAAATTAGAACATTTATGGATTCTGGCCTTGAAATAAGTCACGCCTTTAAAAAAGTAGATCTTTTTGATCCTTTGGTT
TTTTCTATGTTGAGTATAGCTATGAAAAGTTCTAAGCTTGAGTTTTTGAGCGAGGAGATTGCGAAATATTATAAAAACAA
AAGTGAAAATTTAATGGACAAGTTTTTAAGCTTTTTAGAACCTATAATGACTTTATGGGTTGCGATTTTAGTATTGTTTT
TAGCACTTGGAATTTTTTTACCTATATGGGAACTTAGCTCAGGAGTAAATTTTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (262-381)

• Type II secretion system (T2SS), protein F (T2SSF) (59-178)

3D structure

• AlphaFold DB: A0A0Q2ISE7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsF	Campylobacter jejuni subsp. jejuni 81-176	60.66	100	0.611