Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   P4E82_RS01630 Genome accession   NZ_OX442413
Coordinates   328918..329514 (+) Length   198 a.a.
NCBI ID   WP_002779314.1    Uniprot ID   A0A0Q2JMT7
Organism   Campylobacter coli isolate pure strain     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 323918..334514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4E82_RS01620 ctsR 327218..327529 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  P4E82_RS01625 ctsD 327507..328925 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  P4E82_RS01630 ctsP 328918..329514 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  P4E82_RS01635 - 329511..330107 (+) 597 WP_002779313.1 CDC27 family protein -
  P4E82_RS01640 ctsE 330100..331662 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  P4E82_RS01645 ctsF 331649..332824 (+) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  P4E82_RS01650 - 332821..333585 (-) 765 WP_002781157.1 TSUP family transporter -
  P4E82_RS01655 - 333588..334351 (-) 764 Protein_320 TIGR02757 family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23633.42 Da        Isoelectric Point: 9.1569

>NTDB_id=1158357 P4E82_RS01630 WP_002779314.1 328918..329514(+) (ctsP) [Campylobacter coli isolate pure strain]
MNNIIAFRQECFDQINALLKNKALILLWGKSGSGKSVLLQRLALYHNEDFTNEIFTDEKDFHHFIQDKKRKIIILDEVGM
YSPNVLELIRIYSDEMSFVLSSHKKINLFEEEYFKSRFSAIFWLQKPDINELSNYIKMKFNQDFPQKSLKFLMKIYQGNL
RYLDKILQSFCELNTYLNNKKSQDYILRLSALEQGFLK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1158357 P4E82_RS01630 WP_002779314.1 328918..329514(+) (ctsP) [Campylobacter coli isolate pure strain]
ATGAATAATATAATTGCTTTTAGACAAGAATGTTTTGATCAAATCAATGCCTTATTAAAAAATAAAGCTTTGATTTTACT
TTGGGGTAAAAGCGGTAGTGGGAAAAGTGTTTTATTGCAAAGACTTGCGCTATATCATAATGAAGATTTTACCAATGAAA
TTTTTACAGATGAAAAAGATTTTCATCATTTTATACAAGATAAAAAACGAAAAATTATCATACTAGATGAAGTGGGGATG
TATAGTCCTAATGTATTAGAACTAATTCGGATTTATAGCGATGAAATGAGTTTTGTGCTTAGCTCGCATAAAAAAATCAA
TCTTTTTGAAGAGGAGTATTTTAAAAGTCGTTTTAGTGCTATTTTTTGGCTTCAAAAACCTGATATAAATGAATTAAGCA
ATTATATCAAAATGAAATTTAATCAAGACTTTCCCCAAAAATCTTTAAAATTTCTTATGAAAATTTATCAAGGAAATTTA
AGGTATTTAGACAAGATACTTCAAAGTTTTTGCGAATTAAACACCTATTTAAACAATAAAAAAAGTCAAGATTATATTTT
AAGACTAAGCGCATTAGAGCAGGGATTTTTAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2JMT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

57.921

100

0.591

Multiple sequence alignment