Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   P4E82_RS01620 Genome accession   NZ_OX442413
Coordinates   327218..327529 (+) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli isolate pure strain     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 322218..332529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4E82_RS01610 - 322892..323530 (+) 639 WP_002781164.1 HAD family hydrolase -
  P4E82_RS01615 nifJ 323634..327194 (+) 3561 WP_002779317.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  P4E82_RS01620 ctsR 327218..327529 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  P4E82_RS01625 ctsD 327507..328925 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  P4E82_RS01630 ctsP 328918..329514 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  P4E82_RS01635 - 329511..330107 (+) 597 WP_002779313.1 CDC27 family protein -
  P4E82_RS01640 ctsE 330100..331662 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=1158355 P4E82_RS01620 WP_002779316.1 327218..327529(+) (ctsR) [Campylobacter coli isolate pure strain]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=1158355 P4E82_RS01620 WP_002779316.1 327218..327529(+) (ctsR) [Campylobacter coli isolate pure strain]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553

Multiple sequence alignment