Detailed information    

insolico Bioinformatically predicted

Overview


Name   rapC   Type   Regulator
Locus tag   KJP56_RS02505 Genome accession   NZ_OX419652
Coordinates   474809..475957 (+) Length   382 a.a.
NCBI ID   WP_014475800.1    Uniprot ID   A0A0D1KXJ1
Organism   Bacillus subtilis isolate NRS6131     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context


Location: 469809..480957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP56_RS02485 (NRS6131_02500) yclH 470186..470866 (-) 681 WP_213419543.1 ABC transporter ATP-binding protein -
  KJP56_RS02490 (NRS6131_02505) yclI 470882..472342 (-) 1461 WP_213419544.1 ABC transporter permease -
  KJP56_RS02495 (NRS6131_02510) yclJ 472555..473238 (+) 684 WP_015482792.1 two-component system response regulator YclJ -
  KJP56_RS02500 (NRS6131_02515) yclK 473225..474646 (+) 1422 WP_072173981.1 two-component system sensor histidine kinase YclK -
  KJP56_RS02505 (NRS6131_02520) rapC 474809..475957 (+) 1149 WP_014475800.1 response regulator aspartate phosphatase RapC Regulator
  KJP56_RS02510 (NRS6131_02525) phrC 475941..476063 (+) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  KJP56_RS02515 (NRS6131_02530) yczM 476163..476252 (-) 90 WP_015482794.1 YjcZ family sporulation protein -
  KJP56_RS02520 (NRS6131_02535) yczN 476334..476447 (-) 114 WP_032678937.1 YjcZ family sporulation protein -
  KJP56_RS02525 (NRS6131_02540) thrD 476600..477964 (-) 1365 WP_072173982.1 aspartate kinase -
  KJP56_RS02530 (NRS6131_02545) ceuB 478349..479299 (+) 951 WP_015382768.1 petrobactin ABC transporter permease YclN Machinery gene
  KJP56_RS02535 (NRS6131_02550) yclO 479292..480239 (+) 948 WP_014475805.1 petrobactin ABC transporter permease YclO -

Sequence


Protein


Download         Length: 382 a.a.        Molecular weight: 45649.65 Da        Isoelectric Point: 4.9618

>NTDB_id=1158038 KJP56_RS02505 WP_014475800.1 474809..475957(+) (rapC) [Bacillus subtilis isolate NRS6131]
MKSGVIPSSAVGQKINEWYRYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALNMAQAEQKAQLVGRAYYNLGLCYYNQDLLD
PAIDYFEKAVSTFESSRIVNSLPQAYFLITLIYYKQGKHDKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQDQPNEEG
IERCFQYLKNKNMYADIEDLALEVAKYYYEQKWFKLSASYFLQVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=1158038 KJP56_RS02505 WP_014475800.1 474809..475957(+) (rapC) [Bacillus subtilis isolate NRS6131]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAGATATATCCGGACATTCAGCGT
GCCGGATGCCGAAGTGTTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCATGATTCCAACTTGCTGCTTTATT
ATTCACTAATGGAATTCCGGCACCAGCTTATGCTGGATTATCTTGAGCCGTTAGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCAAGAAACATTGACAGCAACCAGGCAGATCTCAAAGGGCTGCTCGACTATTACGTGAATTTTTT
TCGCGGGATGTATGAATTTGATAAGCGGGAATTTATTTCTGCCATTACATACTATAAACAGGCGGAGAAAAAGCTCTCCT
TTGTCGCAGACCATATTGAACGGGCTGAATTTTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTATTTT
TCATTGATTAATATAAAAAACGCCTATGAAATTTACGTGGAGCAGGAAACCTATAATGTGAGAATCATTCAGTGCCATTT
CGTGTTCGGGGTCAACCTGATGGATGAAAGAAATTTCGAACAAGCCGCACGCCATTTCAAATTAGCGCTCAATATGGCCC
AAGCGGAACAAAAAGCCCAGCTGGTCGGAAGAGCATACTACAATCTCGGATTATGCTATTACAATCAAGACCTTCTAGAC
CCTGCCATTGATTACTTTGAAAAAGCGGTCTCCACGTTTGAAAGCAGCAGGATCGTCAATTCTCTCCCGCAAGCCTATTT
TTTAATCACCCTGATTTATTATAAACAGGGAAAACATGATAAAGCTTCGGAATATCACAAGCGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTATGCCGTAAAATTCGAGTTTTTGCAATCCCTATATCAGGATCAGCCCAATGAAGAAGGA
ATCGAACGATGTTTCCAGTACTTAAAAAATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
TTACTATGAACAGAAATGGTTTAAACTGTCTGCTTCCTACTTTCTACAAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0D1KXJ1

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

99.738

100

0.997

  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568


Multiple sequence alignment