Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   KJP45_RS17700 Genome accession   NZ_OX419578
Coordinates   3444355..3445512 (-) Length   385 a.a.
NCBI ID   WP_003227983.1    Uniprot ID   A0A199WDV9
Organism   Bacillus subtilis isolate NRS6128     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3439355..3450512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP45_RS17670 (NRS6128_17510) yvyF 3439609..3440028 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  KJP45_RS17675 (NRS6128_17515) comFC 3440101..3440823 (-) 723 WP_128993465.1 comF operon protein ComFC Machinery gene
  KJP45_RS17680 (NRS6128_17520) comFB 3440787..3441083 (-) 297 WP_015483764.1 late competence protein ComFB -
  KJP45_RS17685 (NRS6128_17525) comFA 3441143..3442534 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  KJP45_RS17690 (NRS6128_17530) fakBA 3442640..3443485 (-) 846 WP_003244125.1 DegV family protein -
  KJP45_RS17695 (NRS6128_17535) degU 3443583..3444272 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KJP45_RS17700 (NRS6128_17540) degS 3444355..3445512 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  KJP45_RS17705 (NRS6128_17545) yvyE 3445729..3446382 (+) 654 WP_003227979.1 YigZ family protein -
  KJP45_RS17710 (NRS6128_17550) tagV 3446382..3447557 (+) 1176 WP_213414818.1 LCP family protein -
  KJP45_RS17715 (NRS6128_17555) tagO 3447630..3448706 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -
  KJP45_RS17720 (NRS6128_17560) tuaH 3448851..3450044 (-) 1194 WP_213414839.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44957.76 Da        Isoelectric Point: 6.2957

>NTDB_id=1157856 KJP45_RS17700 WP_003227983.1 3444355..3445512(-) (degS) [Bacillus subtilis isolate NRS6128]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=1157856 KJP45_RS17700 WP_003227983.1 3444355..3445512(-) (degS) [Bacillus subtilis isolate NRS6128]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATTGAGCTTGGCGATAAACTTGAAGTGCAAACCCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGAATTATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTCCGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment