Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   KJP45_RS17695 Genome accession   NZ_OX419578
Coordinates   3443583..3444272 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis isolate NRS6128     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3438583..3449272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP45_RS17660 (NRS6128_17500) flgN 3438764..3439246 (-) 483 WP_032722609.1 flagellar protein FlgN -
  KJP45_RS17665 (NRS6128_17505) flgM 3439262..3439528 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  KJP45_RS17670 (NRS6128_17510) yvyF 3439609..3440028 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  KJP45_RS17675 (NRS6128_17515) comFC 3440101..3440823 (-) 723 WP_128993465.1 comF operon protein ComFC Machinery gene
  KJP45_RS17680 (NRS6128_17520) comFB 3440787..3441083 (-) 297 WP_015483764.1 late competence protein ComFB -
  KJP45_RS17685 (NRS6128_17525) comFA 3441143..3442534 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  KJP45_RS17690 (NRS6128_17530) fakBA 3442640..3443485 (-) 846 WP_003244125.1 DegV family protein -
  KJP45_RS17695 (NRS6128_17535) degU 3443583..3444272 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KJP45_RS17700 (NRS6128_17540) degS 3444355..3445512 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  KJP45_RS17705 (NRS6128_17545) yvyE 3445729..3446382 (+) 654 WP_003227979.1 YigZ family protein -
  KJP45_RS17710 (NRS6128_17550) tagV 3446382..3447557 (+) 1176 WP_213414818.1 LCP family protein -
  KJP45_RS17715 (NRS6128_17555) tagO 3447630..3448706 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1157855 KJP45_RS17695 WP_003219701.1 3443583..3444272(-) (degU) [Bacillus subtilis isolate NRS6128]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1157855 KJP45_RS17695 WP_003219701.1 3443583..3444272(-) (degU) [Bacillus subtilis isolate NRS6128]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment