Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   KJP45_RS17675 Genome accession   NZ_OX419578
Coordinates   3440101..3440823 (-) Length   240 a.a.
NCBI ID   WP_128993465.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6128     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3435101..3445823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP45_RS17640 (NRS6128_17480) fliW 3435241..3435672 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  KJP45_RS17645 (NRS6128_17485) yviE 3435693..3436268 (-) 576 WP_015384781.1 DUF6470 family protein -
  KJP45_RS17650 (NRS6128_17490) flgL 3436315..3437211 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  KJP45_RS17655 (NRS6128_17495) flgK 3437222..3438745 (-) 1524 WP_046160905.1 flagellar hook-associated protein FlgK -
  KJP45_RS17660 (NRS6128_17500) flgN 3438764..3439246 (-) 483 WP_032722609.1 flagellar protein FlgN -
  KJP45_RS17665 (NRS6128_17505) flgM 3439262..3439528 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  KJP45_RS17670 (NRS6128_17510) yvyF 3439609..3440028 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  KJP45_RS17675 (NRS6128_17515) comFC 3440101..3440823 (-) 723 WP_128993465.1 comF operon protein ComFC Machinery gene
  KJP45_RS17680 (NRS6128_17520) comFB 3440787..3441083 (-) 297 WP_015483764.1 late competence protein ComFB -
  KJP45_RS17685 (NRS6128_17525) comFA 3441143..3442534 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  KJP45_RS17690 (NRS6128_17530) fakBA 3442640..3443485 (-) 846 WP_003244125.1 DegV family protein -
  KJP45_RS17695 (NRS6128_17535) degU 3443583..3444272 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KJP45_RS17700 (NRS6128_17540) degS 3444355..3445512 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27405.67 Da        Isoelectric Point: 9.4913

>NTDB_id=1157853 KJP45_RS17675 WP_128993465.1 3440101..3440823(-) (comFC) [Bacillus subtilis isolate NRS6128]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKEALSRFKFRGDAEIINAFKSDFSSTFSKAYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAAGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1157853 KJP45_RS17675 WP_128993465.1 3440101..3440823(-) (comFC) [Bacillus subtilis isolate NRS6128]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAGCGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGCTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGTTTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GATCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAGCAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGCAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment