Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   KJP47_RS17080 Genome accession   NZ_OX419577
Coordinates   3168917..3169561 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6120     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3163917..3174561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP47_RS17045 (NRS6120_17590) mrpB 3165109..3165540 (+) 432 WP_213382585.1 Na(+)/H(+) antiporter subunit B -
  KJP47_RS17050 (NRS6120_17595) mrpC 3165540..3165881 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  KJP47_RS17055 (NRS6120_17600) mrpD 3165874..3167355 (+) 1482 WP_213382587.1 Na+/H+ antiporter subunit D -
  KJP47_RS17060 (NRS6120_17605) mrpE 3167361..3167837 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  KJP47_RS17065 (NRS6120_17610) mrpF 3167837..3168121 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  KJP47_RS17070 (NRS6120_17615) mnhG 3168105..3168479 (+) 375 WP_213382589.1 monovalent cation/H(+) antiporter subunit G -
  KJP47_RS17075 (NRS6120_17620) yuxO 3168518..3168898 (-) 381 WP_071579112.1 hotdog fold thioesterase -
  KJP47_RS17080 (NRS6120_17625) comA 3168917..3169561 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  KJP47_RS17085 (NRS6120_17630) comP 3169642..3171951 (-) 2310 WP_213382590.1 histidine kinase Regulator
  KJP47_RS17090 (NRS6120_17635) comX 3171970..3172137 (-) 168 WP_041057586.1 competence pheromone ComX Regulator
  KJP47_RS17095 (NRS6120_17640) comQ 3172125..3173024 (-) 900 WP_038828674.1 class 1 isoprenoid biosynthesis enzyme Regulator
  KJP47_RS17100 (NRS6120_17645) degQ 3173209..3173349 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  KJP47_RS17105 - 3173571..3173696 (+) 126 WP_003228793.1 hypothetical protein -
  KJP47_RS17110 (NRS6120_17650) - 3173810..3174178 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=1157768 KJP47_RS17080 WP_003220716.1 3168917..3169561(-) (comA) [Bacillus subtilis isolate NRS6120]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1157768 KJP47_RS17080 WP_003220716.1 3168917..3169561(-) (comA) [Bacillus subtilis isolate NRS6120]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCTGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment