Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   KJP52_RS12545 Genome accession   NZ_OX419575
Coordinates   2444734..2445165 (-) Length   143 a.a.
NCBI ID   WP_004398628.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6121     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2439734..2450165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP52_RS12495 (NRS6121_12400) sinI 2439928..2440101 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  KJP52_RS12500 (NRS6121_12405) sinR 2440135..2440470 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  KJP52_RS12505 (NRS6121_12410) tasA 2440563..2441348 (-) 786 WP_003230183.1 biofilm matrix protein TasA -
  KJP52_RS12510 (NRS6121_12415) sipW 2441412..2441984 (-) 573 WP_003230181.1 signal peptidase I -
  KJP52_RS12515 (NRS6121_12420) tapA 2441968..2442729 (-) 762 WP_003230180.1 amyloid fiber anchoring/assembly protein TapA -
  KJP52_RS12520 (NRS6121_12425) yqzG 2443001..2443327 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  KJP52_RS12525 (NRS6121_12430) spoIIT 2443369..2443548 (-) 180 WP_003230176.1 YqzE family protein -
  KJP52_RS12530 (NRS6121_12435) comGG 2443619..2443993 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  KJP52_RS12535 (NRS6121_12440) comGF 2443994..2444377 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  KJP52_RS12540 (NRS6121_12445) comGE 2444403..2444750 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  KJP52_RS12545 (NRS6121_12450) comGD 2444734..2445165 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  KJP52_RS12550 (NRS6121_12455) comGC 2445155..2445451 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  KJP52_RS12555 (NRS6121_12460) comGB 2445465..2446502 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  KJP52_RS12560 (NRS6121_12465) comGA 2446489..2447559 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  KJP52_RS12565 (NRS6121_12475) corA 2447971..2448924 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16008.62 Da        Isoelectric Point: 10.0432

>NTDB_id=1157591 KJP52_RS12545 WP_004398628.1 2444734..2445165(-) (comGD) [Bacillus subtilis isolate NRS6121]
MNIKLNEEKGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAASQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=1157591 KJP52_RS12545 WP_004398628.1 2444734..2445165(-) (comGD) [Bacillus subtilis isolate NRS6121]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGTCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTTATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment