Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   KJP57_RS13715 Genome accession   NZ_OX419573
Coordinates   2606131..2606466 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis isolate NRS6085     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2601131..2611466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP57_RS13695 (NRS6085_13705) gcvT 2601723..2602811 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  KJP57_RS13700 (NRS6085_13710) yqhH 2603253..2604926 (+) 1674 WP_124058586.1 SNF2-related protein -
  KJP57_RS13705 (NRS6085_13715) yqhG 2604947..2605741 (+) 795 WP_003230200.1 YqhG family protein -
  KJP57_RS13710 (NRS6085_13720) sinI 2605924..2606097 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  KJP57_RS13715 (NRS6085_13725) sinR 2606131..2606466 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  KJP57_RS13720 (NRS6085_13730) tasA 2606559..2607344 (-) 786 WP_128738018.1 biofilm matrix protein TasA -
  KJP57_RS13725 (NRS6085_13735) sipW 2607408..2607980 (-) 573 WP_128738626.1 signal peptidase I -
  KJP57_RS13730 (NRS6085_13740) tapA 2607964..2608725 (-) 762 WP_101169542.1 amyloid fiber anchoring/assembly protein TapA -
  KJP57_RS13735 (NRS6085_13745) yqzG 2608998..2609324 (+) 327 WP_024573388.1 YqzG/YhdC family protein -
  KJP57_RS13740 (NRS6085_13750) spoIIT 2609366..2609545 (-) 180 WP_014480252.1 YqzE family protein -
  KJP57_RS13745 (NRS6085_13755) comGG 2609616..2609990 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  KJP57_RS13750 (NRS6085_13760) comGF 2609991..2610374 (-) 384 WP_128738019.1 ComG operon protein ComGF Machinery gene
  KJP57_RS13755 (NRS6085_13765) comGE 2610400..2610747 (-) 348 WP_128738020.1 ComG operon protein 5 Machinery gene
  KJP57_RS13760 (NRS6085_13770) comGD 2610731..2611162 (-) 432 WP_024573390.1 comG operon protein ComGD Machinery gene
  KJP57_RS13765 (NRS6085_13775) comGC 2611152..2611448 (-) 297 WP_024573391.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1157502 KJP57_RS13715 WP_003226345.1 2606131..2606466(+) (sinR) [Bacillus subtilis isolate NRS6085]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1157502 KJP57_RS13715 WP_003226345.1 2606131..2606466(+) (sinR) [Bacillus subtilis isolate NRS6085]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
TCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment