Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   SMUFR_RS01990 Genome accession   NZ_CP007016
Coordinates   387454..388488 (+) Length   344 a.a.
NCBI ID   WP_002279713.1    Uniprot ID   Q8DVQ6
Organism   Streptococcus mutans UA159-FR     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 382454..393488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUFR_RS01965 (SMUFR_0350) tsaE 383788..384231 (+) 444 WP_002272923.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SMUFR_RS01970 (SMUFR_0351) brpA 384562..385782 (+) 1221 WP_002262611.1 biofilm formation/cell division transcriptional regulator BrpA -
  SMUFR_RS01975 (SMUFR_0352) - 385952..386245 (-) 294 WP_002268777.1 hypothetical protein -
  SMUFR_RS01980 (SMUFR_0353) - 386242..386661 (-) 420 WP_002262609.1 HIT family protein -
  SMUFR_RS01985 (SMUFR_0354) pptA 386726..387451 (+) 726 WP_002262608.1 ABC transporter ATP-binding protein Regulator
  SMUFR_RS01990 (SMUFR_0355) pptB 387454..388488 (+) 1035 WP_002279713.1 ABC transporter permease Regulator
  SMUFR_RS01995 (SMUFR_0356) ccrZ 388547..389329 (+) 783 WP_002262606.1 cell cycle regulator CcrZ -
  SMUFR_RS02000 (SMUFR_0357) trmB 389339..389974 (+) 636 WP_002262605.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SMUFR_RS02010 (SMUFR_0358) rimP 390246..390737 (+) 492 WP_002262604.1 ribosome maturation factor RimP -
  SMUFR_RS02015 (SMUFR_0359) nusA 390773..391966 (+) 1194 WP_002262603.1 transcription termination factor NusA -
  SMUFR_RS02020 (SMUFR_0360) rnpM 391984..392280 (+) 297 WP_002263922.1 RNase P modulator RnpM -
  SMUFR_RS02025 (SMUFR_0361) - 392273..392575 (+) 303 WP_002262601.1 YlxQ-related RNA-binding protein -
  SMUFR_RS11015 - 392596..392691 (+) 96 Protein_373 translation initiation factor IF-2 N-terminal domain-containing protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40572.02 Da        Isoelectric Point: 10.6624

>NTDB_id=115750 SMUFR_RS01990 WP_002279713.1 387454..388488(+) (pptB) [Streptococcus mutans UA159-FR]
MKAIFTKRRFHFINQCSRYLRYVFNDHFVLVLIFLLGFLMVQYSQLLKHFPANHWPIMLVLVLVVLTLLFWGNIATYLEP
ADQQFLLVREKDIVALIQKAKRRALFFWGTWQTLLLLILAPLFLRLGLALFSFLFLLLFLLFLKGLIIEKKSRAFLKQKG
LNWDHALNQEKKRQQAILKFFSLFTNVKGISNSVKRRAYLDFGTKLLPKETHKAWTNLYLRAFLRSGDYLGLTFRLGFLS
LLSLLFIDNPLMSAGLALLFNYLLLFQLLALYKHYDHQYLTALFPISKAEKKANLKQLLRVILYFLTAVEFCFSFSWQKT
IILLLAMLCLNEVYLPYKIKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=115750 SMUFR_RS01990 WP_002279713.1 387454..388488(+) (pptB) [Streptococcus mutans UA159-FR]
ATGAAGGCAATTTTTACAAAAAGACGATTCCATTTTATCAATCAATGCAGTCGATACCTTCGCTATGTTTTTAATGATCA
TTTTGTTTTAGTATTGATTTTTTTACTAGGTTTTCTTATGGTACAGTATAGCCAACTGTTAAAACATTTTCCGGCTAATC
ATTGGCCTATCATGCTTGTTTTAGTGTTAGTTGTCTTGACCTTACTATTTTGGGGAAATATAGCGACTTATTTGGAACCA
GCGGATCAGCAATTTCTTTTGGTCAGGGAAAAGGACATTGTTGCTTTAATCCAAAAAGCTAAAAGACGAGCTCTTTTCTT
TTGGGGAACTTGGCAGACACTCTTGCTTCTTATTTTGGCACCTCTTTTTTTACGTTTGGGACTGGCACTTTTTTCTTTTC
TTTTTTTGCTCCTTTTTTTGCTCTTTTTAAAGGGATTAATCATTGAAAAAAAAAGCAGAGCTTTTTTGAAGCAGAAAGGA
CTGAACTGGGATCATGCTCTTAATCAAGAGAAAAAACGGCAGCAGGCAATTTTAAAATTCTTTTCACTTTTTACCAATGT
TAAGGGAATTTCAAACAGCGTTAAGCGACGGGCTTATTTGGATTTTGGGACAAAATTATTGCCGAAGGAGACTCATAAAG
CGTGGACTAATCTTTATTTAAGAGCTTTTTTACGTAGTGGCGATTATTTAGGACTGACCTTTCGTTTAGGTTTTTTAAGT
CTTTTAAGTCTTCTTTTTATTGATAATCCTTTAATGTCAGCAGGTTTAGCGCTCCTTTTTAATTACCTCTTGCTTTTTCA
ATTGTTGGCTCTTTATAAACATTATGATCATCAATATTTAACAGCCCTTTTTCCCATTTCAAAAGCGGAGAAGAAGGCTA
ATTTGAAACAGTTATTGCGTGTTATTCTATATTTTCTAACAGCTGTTGAATTTTGTTTTAGCTTTTCATGGCAAAAGACA
ATTATTTTACTTTTGGCAATGCTTTGTCTCAATGAAGTTTATCTGCCTTACAAAATAAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q8DVQ6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

51.163

100

0.512

  pptB Streptococcus thermophilus LMD-9

50.581

100

0.506


Multiple sequence alignment