Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   KJP59_RS12915 Genome accession   NZ_OX419570
Coordinates   2500172..2500603 (-) Length   143 a.a.
NCBI ID   WP_004398628.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6134     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2495172..2505603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP59_RS12865 (NRS6134_12815) sinI 2495366..2495539 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  KJP59_RS12870 (NRS6134_12820) sinR 2495573..2495908 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  KJP59_RS12875 (NRS6134_12825) tasA 2496001..2496786 (-) 786 WP_003230183.1 biofilm matrix protein TasA -
  KJP59_RS12880 (NRS6134_12830) sipW 2496850..2497422 (-) 573 WP_003230181.1 signal peptidase I -
  KJP59_RS12885 (NRS6134_12835) tapA 2497406..2498167 (-) 762 WP_003230180.1 amyloid fiber anchoring/assembly protein TapA -
  KJP59_RS12890 (NRS6134_12840) yqzG 2498439..2498765 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  KJP59_RS12895 (NRS6134_12845) spoIIT 2498807..2498986 (-) 180 WP_003230176.1 YqzE family protein -
  KJP59_RS12900 (NRS6134_12850) comGG 2499057..2499431 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  KJP59_RS12905 (NRS6134_12855) comGF 2499432..2499815 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  KJP59_RS12910 (NRS6134_12860) comGE 2499841..2500188 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  KJP59_RS12915 (NRS6134_12865) comGD 2500172..2500603 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  KJP59_RS12920 (NRS6134_12870) comGC 2500593..2500889 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  KJP59_RS12925 (NRS6134_12875) comGB 2500903..2501940 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  KJP59_RS12930 (NRS6134_12880) comGA 2501927..2502997 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  KJP59_RS12935 (NRS6134_12890) corA 2503409..2504362 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16008.62 Da        Isoelectric Point: 10.0432

>NTDB_id=1157425 KJP59_RS12915 WP_004398628.1 2500172..2500603(-) (comGD) [Bacillus subtilis isolate NRS6134]
MNIKLNEEKGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAASQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=1157425 KJP59_RS12915 WP_004398628.1 2500172..2500603(-) (comGD) [Bacillus subtilis isolate NRS6134]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGTCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTTATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment