Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   KJP59_RS12870 Genome accession   NZ_OX419570
Coordinates   2495573..2495908 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis isolate NRS6134     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2490573..2500908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP59_RS12850 (NRS6134_12800) gcvT 2491165..2492253 (-) 1089 WP_003230205.1 glycine cleavage system aminomethyltransferase GcvT -
  KJP59_RS12855 (NRS6134_12805) yqhH 2492695..2494368 (+) 1674 WP_003230203.1 SNF2-related protein -
  KJP59_RS12860 (NRS6134_12810) yqhG 2494389..2495183 (+) 795 WP_003230200.1 YqhG family protein -
  KJP59_RS12865 (NRS6134_12815) sinI 2495366..2495539 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  KJP59_RS12870 (NRS6134_12820) sinR 2495573..2495908 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  KJP59_RS12875 (NRS6134_12825) tasA 2496001..2496786 (-) 786 WP_003230183.1 biofilm matrix protein TasA -
  KJP59_RS12880 (NRS6134_12830) sipW 2496850..2497422 (-) 573 WP_003230181.1 signal peptidase I -
  KJP59_RS12885 (NRS6134_12835) tapA 2497406..2498167 (-) 762 WP_003230180.1 amyloid fiber anchoring/assembly protein TapA -
  KJP59_RS12890 (NRS6134_12840) yqzG 2498439..2498765 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  KJP59_RS12895 (NRS6134_12845) spoIIT 2498807..2498986 (-) 180 WP_003230176.1 YqzE family protein -
  KJP59_RS12900 (NRS6134_12850) comGG 2499057..2499431 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  KJP59_RS12905 (NRS6134_12855) comGF 2499432..2499815 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  KJP59_RS12910 (NRS6134_12860) comGE 2499841..2500188 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  KJP59_RS12915 (NRS6134_12865) comGD 2500172..2500603 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  KJP59_RS12920 (NRS6134_12870) comGC 2500593..2500889 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1157421 KJP59_RS12870 WP_003226345.1 2495573..2495908(+) (sinR) [Bacillus subtilis isolate NRS6134]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1157421 KJP59_RS12870 WP_003226345.1 2495573..2495908(+) (sinR) [Bacillus subtilis isolate NRS6134]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment