Detailed information NTG0115732

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: N018_RS21535
• Genome accession: NZ_CP007014
• Coordinates: 4882745..4884085 (+)
• Length: 446 a.a.
• NCBI ID: WP_024644957.1
• Uniprot ID: -
• Organism: Pseudomonas syringae CC1557
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4877745..4889085

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N018_RS21510 (N018_21985)	pgeF	4877943..4878671 (-)	729	WP_024644961.1	peptidoglycan editing factor PgeF	-
N018_RS21515 (N018_21990)	rluD	4878668..4879630 (-)	963	WP_005895286.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
N018_RS21520 (N018_21995)	-	4879780..4880802 (+)	1023	WP_024644960.1	outer membrane protein assembly factor BamD	-
N018_RS21525 (N018_22000)	-	4880921..4881160 (+)	240	WP_032632732.1	PP0621 family protein	-
N018_RS21530 (N018_22005)	pilS	4881150..4882742 (+)	1593	WP_024644958.1	sensor histidine kinase	Regulator
N018_RS21535 (N018_22010)	pilR	4882745..4884085 (+)	1341	WP_024644957.1	sigma-54-dependent transcriptional regulator	Regulator
N018_RS21540 (N018_22015)	-	4884403..4885020 (+)	618	WP_024647403.1	TetR/AcrR family transcriptional regulator	-
N018_RS21545 (N018_22020)	-	4885102..4886217 (+)	1116	WP_024647402.1	efflux RND transporter periplasmic adaptor subunit	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49992.04 Da
• Isoelectric Point: 6.4473

>NTDB_id=115732 N018_RS21535 WP_024644957.1 4882745..4884085(+) (pilR) [Pseudomonas syringae CC1557]
MSPRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHEWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPQVPVA
MITAHGNLDTAIHALKAGAFDFVTKPVDLNRLRELVTSALSLPSSVQPACSIDSRLLGDSPPMRTLRNQIGKLARSQAPI
YISGESGSGKELVARLIHEQGPRSEKPFVPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAQNGTLFLDEVADL
PLAMQVKLLRAIQEKSIRSIGGQQEQVVDVRILCATHKDLSAEVAAGRFRQDLYYRLNVIELRVPSLRERREDIDQLAAS
VLRRLAGKDAQPVARLHAQALETLKNYRFPGNVRELENMLERAYTLCENDEIHASDLRLAESCSPQEHHGANLADIDNLE
DYLESVERKLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=115732 N018_RS21535 WP_024644957.1 4882745..4884085(+) (pilR) [Pseudomonas syringae CC1557]
ATGAGCCCACGGCAAAAGATCCTGATAGTCGACGATGAGCCGGATATTCGCGAACTCCTGGAAATCACTCTGGGACGCAT
GAAGCTCGACACCCGCAGCGCACGCAATGTTGCCGAAGCGCATGAATGGCTGGCGCGCGAGCCGTTCGACATGTGTCTGA
CCGACATGCGCTTGCCCGATGGCAATGGCCTTGAACTGGTGCAGCACATTCAGCACGGTTATCCACAGGTGCCGGTGGCC
ATGATCACGGCCCATGGCAATCTGGACACCGCGATTCATGCGCTCAAGGCGGGAGCCTTCGATTTCGTGACCAAACCGGT
CGACCTCAACCGGCTGCGTGAGCTGGTGACCAGCGCGCTGAGCCTGCCCTCAAGCGTTCAACCGGCGTGCAGCATCGACA
GCCGCCTGCTAGGCGATTCGCCGCCAATGCGCACGTTGCGCAATCAGATCGGCAAGCTTGCGCGCAGTCAGGCGCCGATC
TACATCAGCGGCGAATCAGGCAGCGGCAAAGAGCTGGTGGCGCGGCTGATACACGAACAGGGGCCGCGTAGCGAAAAGCC
CTTCGTGCCGGTCAACTGCGGGGCGATCCCTTCTGAACTGATGGAAAGCGAATTCTTCGGCCATCGCAAAGGCAGCTTCA
GTGGTGCGCACGAAGACAAGCCCGGCCTGTTTCAGGCAGCCCAAAACGGAACGCTGTTTCTCGACGAAGTGGCTGACCTG
CCGCTGGCCATGCAGGTAAAACTGTTGCGGGCGATTCAGGAGAAATCCATTCGCAGCATCGGCGGCCAGCAGGAACAGGT
GGTCGACGTGCGCATCCTGTGCGCGACCCATAAAGACCTCAGTGCCGAAGTGGCGGCCGGGCGTTTTCGTCAGGACCTGT
ATTACCGGCTGAACGTGATCGAACTGCGCGTGCCCTCATTGCGCGAACGCCGTGAGGATATCGACCAACTGGCAGCCAGC
GTTCTGCGCCGCCTGGCAGGCAAGGATGCCCAGCCGGTTGCGCGTTTGCATGCACAGGCGCTGGAAACCCTGAAAAATTA
TCGCTTCCCCGGTAACGTGCGCGAACTGGAGAACATGCTGGAGCGCGCCTACACCCTCTGCGAAAACGATGAGATCCACG
CCAGCGACCTGCGTCTGGCCGAGTCCTGCAGCCCCCAGGAACACCATGGCGCGAACCTCGCCGATATCGACAATCTTGAG
GATTACCTGGAAAGCGTCGAGCGTAAACTGATCCTGCAAGCCCTCGAAGAAACCCGCTGGAACCGCACCGCTGCCGCAGA
ACGGCTGAGTTTGTCCTTCAGGTCACTGCGTTACCGGCTGAAGAAGCTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.781	99.327	0.783
pilR	Acinetobacter baumannii strain A118	48.261	100	0.498