Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   N018_RS21530 Genome accession   NZ_CP007014
Coordinates   4881150..4882742 (+) Length   530 a.a.
NCBI ID   WP_024644958.1    Uniprot ID   W0MZU3
Organism   Pseudomonas syringae CC1557     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4876150..4887742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N018_RS21510 (N018_21985) pgeF 4877943..4878671 (-) 729 WP_024644961.1 peptidoglycan editing factor PgeF -
  N018_RS21515 (N018_21990) rluD 4878668..4879630 (-) 963 WP_005895286.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  N018_RS21520 (N018_21995) - 4879780..4880802 (+) 1023 WP_024644960.1 outer membrane protein assembly factor BamD -
  N018_RS21525 (N018_22000) - 4880921..4881160 (+) 240 WP_032632732.1 PP0621 family protein -
  N018_RS21530 (N018_22005) pilS 4881150..4882742 (+) 1593 WP_024644958.1 sensor histidine kinase Regulator
  N018_RS21535 (N018_22010) pilR 4882745..4884085 (+) 1341 WP_024644957.1 sigma-54-dependent transcriptional regulator Regulator
  N018_RS21540 (N018_22015) - 4884403..4885020 (+) 618 WP_024647403.1 TetR/AcrR family transcriptional regulator -
  N018_RS21545 (N018_22020) - 4885102..4886217 (+) 1116 WP_024647402.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58344.38 Da        Isoelectric Point: 6.7804

>NTDB_id=115731 N018_RS21530 WP_024644958.1 4881150..4882742(+) (pilS) [Pseudomonas syringae CC1557]
MTAETSYLASPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPTRQSHLF
SLAMVDAIMLSGLFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARMQTSEVLAEQRAADVDSLEELNALILQRMRTGILVLDARRQVLLANQGALSLLGHERLVGQVID
AYSPQLVERLRQWLINPIMLPRSITSSAIGPELQPSFVALNRGDQRQTLIFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEALSAPDRRLGQIIHDQSQRIDRVIENVLQLSRRREAQPQLLDLKVWLDAFVADFRDSVLPN
QLLHVEVHSGTLTTRMDAEQLTQVVTNLVQNGLRYSSRNHPLAQVWLKLHHDLQSDLPILEVLDDGPGVSEPHLSKLFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYAPRADGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=115731 N018_RS21530 WP_024644958.1 4881150..4882742(+) (pilS) [Pseudomonas syringae CC1557]
GTGACCGCTGAGACGTCCTACCTTGCCAGCCCACAGGCGCAACGGATTCTGCGCCTGTATCACCTTTATCGACTGACCAT
TGGCGTCGTATTGGTCCTGTTGATCTCCAGCAGCCTGGAAACCGAACTGTTGCAACTGGCCAACCCGAACCTGTTTCGCT
CTGGTTGCTGGCTGTATCTGGTGTTCAATATTCTGGTCGTGGTACTGCTGGAACGGCCTACTCGTCAGTCGCACCTGTTC
AGCCTGGCGATGGTCGACGCCATCATGCTGTCCGGCTTGTTCTATGCGGCGGGCGGCCCTTCCAGCGGCATCGGCAATCT
GCTGATCGCCTCGGTGGCTATCAGCAACGTATTGCTGCGCGGCCGCATCGGCCTGTTGATAGCCGCCGTGTCTGCCATCG
GCATCATTTACCTGACGTTTTACATCAGCTTCGGCACGCCTTCGGTGTCCAACGACTACGTGCAGGCAGGTTCTCTGGGT
GCACTGTGCTTCGCCGCTGCGCTGCTGGTGCAGGCGCTGACCGCACGCATGCAGACCAGCGAAGTACTTGCCGAACAGCG
AGCAGCGGACGTCGACAGTCTGGAAGAACTCAACGCTCTGATCCTGCAACGCATGCGTACCGGCATTCTGGTGCTGGACG
CCCGCCGTCAGGTGCTGCTGGCCAATCAGGGCGCACTGTCTTTACTTGGCCACGAGCGGCTGGTCGGCCAGGTCATCGAC
GCCTACTCGCCGCAACTGGTGGAGCGCCTGCGCCAGTGGCTGATCAACCCGATCATGTTGCCACGCAGCATCACCTCATC
TGCAATCGGGCCTGAACTGCAACCCAGCTTTGTCGCCCTCAATCGTGGCGATCAGCGCCAGACGCTGATTTTTCTTGAAG
ACCTCTCGCAGATCGCCCATCAGGCGCAACAACTCAAGCTCGCCGCGCTGGGTCGCCTGACTGCCGGCATTGCCCATGAA
ATACGCAACCCACTGGGTGCGGTGAGCCATGCGGCGCAGTTGCTGAACGAGTCGGAAGCGCTCAGCGCGCCGGATCGTCG
TTTGGGGCAGATCATTCACGATCAGTCGCAACGCATCGACCGGGTGATCGAAAACGTCTTGCAGCTCTCCCGGCGACGCG
AGGCGCAACCGCAGCTGCTGGATCTGAAAGTCTGGCTGGACGCCTTTGTCGCCGACTTCCGCGACTCCGTCCTGCCCAAC
CAGCTGCTTCATGTGGAGGTCCATTCCGGCACGCTGACCACCCGCATGGATGCGGAGCAACTGACACAAGTCGTGACCAA
TCTGGTGCAGAACGGTCTGCGCTACAGCAGCAGAAATCACCCATTAGCGCAGGTCTGGCTGAAGCTGCATCATGACCTGC
AAAGCGACCTGCCCATTCTGGAAGTACTGGATGACGGGCCGGGGGTCAGCGAGCCGCATCTGAGCAAGCTGTTCGAACCG
TTTTTTACCACCGAAAGCAAAGGCACCGGTCTGGGGCTATACCTTTCCAGAGAGTTGTGCGAAAGCAATCAGGCGCATCT
GGAATACGCCCCCCGCGCGGATGGCGGCAGTTGTTTGCGCATCACCTTCGCCCACCCGTTCAAAACGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W0MZU3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

62.147

100

0.623

Multiple sequence alignment