Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   KJP42_RS12470 Genome accession   NZ_OX419567
Coordinates   2438288..2438623 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis isolate NRS6107     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2433288..2443623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP42_RS12450 (NRS6107_12385) gcvT 2433880..2434968 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  KJP42_RS12455 (NRS6107_12390) yqhH 2435410..2437083 (+) 1674 WP_004398544.1 SNF2-related protein -
  KJP42_RS12460 (NRS6107_12395) yqhG 2437104..2437898 (+) 795 WP_003230200.1 YqhG family protein -
  KJP42_RS12465 (NRS6107_12400) sinI 2438081..2438254 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  KJP42_RS12470 (NRS6107_12405) sinR 2438288..2438623 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  KJP42_RS12475 (NRS6107_12410) tasA 2438716..2439501 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  KJP42_RS12480 (NRS6107_12415) sipW 2439565..2440137 (-) 573 WP_003246088.1 signal peptidase I -
  KJP42_RS12485 (NRS6107_12420) tapA 2440121..2440882 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  KJP42_RS12490 (NRS6107_12425) yqzG 2441154..2441480 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  KJP42_RS12495 (NRS6107_12430) spoIIT 2441522..2441701 (-) 180 WP_003230176.1 YqzE family protein -
  KJP42_RS12500 (NRS6107_12435) comGG 2441772..2442146 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  KJP42_RS12505 (NRS6107_12440) comGF 2442147..2442530 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  KJP42_RS12510 (NRS6107_12445) comGE 2442556..2442903 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  KJP42_RS12515 (NRS6107_12450) comGD 2442887..2443318 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  KJP42_RS12520 (NRS6107_12455) comGC 2443308..2443604 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1157249 KJP42_RS12470 WP_003226345.1 2438288..2438623(+) (sinR) [Bacillus subtilis isolate NRS6107]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1157249 KJP42_RS12470 WP_003226345.1 2438288..2438623(+) (sinR) [Bacillus subtilis isolate NRS6107]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment