Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   N018_RS17725 Genome accession   NZ_CP007014
Coordinates   4028850..4031066 (-) Length   738 a.a.
NCBI ID   WP_025390367.1    Uniprot ID   W0MXU9
Organism   Pseudomonas syringae CC1557     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4023850..4036066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N018_RS17695 (N018_18095) murB 4024651..4025670 (-) 1020 WP_024645711.1 UDP-N-acetylmuramate dehydrogenase -
  N018_RS17700 (N018_18100) kdsB 4025705..4026469 (-) 765 WP_025390364.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N018_RS17705 (N018_18105) - 4026466..4026651 (-) 186 WP_025390365.1 Trm112 family protein -
  N018_RS17710 (N018_18110) lpxK 4026669..4027664 (-) 996 WP_025390366.1 tetraacyldisaccharide 4'-kinase -
  N018_RS17715 (N018_18115) - 4027664..4028095 (-) 432 WP_007253407.1 ExbD/TolR family protein -
  N018_RS17720 (N018_18120) exbB 4028092..4028769 (-) 678 WP_024645714.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N018_RS17725 (N018_18125) comA 4028850..4031066 (-) 2217 WP_025390367.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N018_RS17730 (N018_18130) - 4031203..4031991 (-) 789 WP_025390368.1 ABC transporter permease -
  N018_RS17735 (N018_18135) - 4031988..4032920 (-) 933 WP_024671866.1 ABC transporter ATP-binding protein -
  N018_RS17740 (N018_18140) - 4033108..4033731 (-) 624 WP_025390369.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80373.49 Da        Isoelectric Point: 10.3493

>NTDB_id=115722 N018_RS17725 WP_025390367.1 4028850..4031066(-) (comA) [Pseudomonas syringae CC1557]
MRTGMIALALGLVALRFLPALPPAWLLLLMPVLALMLLPFRTYPLALFLLGFTWACISAQWALNDRLPSRLDGRTLWVQG
QIVGLPSVAEGVVRFELEDASSRRSKLPARIRLAWYVGPEIRSGERWRLAVKLKRPGGLVNPDAFDYQAWLLAQRIGATG
TVADGQRLAPARGAWRDGIRQRLLAVDAQGREGGLAALVLGDGSGLSRTDWQVLQDTGTVHLLVISGQHIGLLAGVVYAL
VAGLARWGLWPRALPWLPCACGLAFAAALGYGLLAGFDVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNTVLIFEPL
VTLQPGFWLSFTAVGILVLIFSGRLGAWSGWQSWTRAQWLIAVGLLPILLALNLPISLSGPFANLIAVPWVSVIVLPPAL
IGTLLLPIPVLGEGLLWLAGGALEWLFVFLALVAGALPAWLPSAVPVWAWGLSLFGALLLLLPKGVPMRPLGWPLLLLCV
FPPLESVPTGRVDVLQLDVGQGLAILLRTRHHTLLYDAGPRFGEFDIGERVVVPAIRKTGVRHLDLMLISHADADHAGGA
RAVHQAFPVTRVLGGELARLAPQLDARLCESGERWEWDGVIFTTWRWEQAPDGNAASCILSVDAGGERLLLTGDIDVHAE
RAAIDSGFDLRAHWLQAPHHGSRSSSSKPFLQAVAPVGVVISRGRNNAFGHPHPSVMTRYRWLGISSYDSAELGAIHLQL
GAFGSPRAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=115722 N018_RS17725 WP_025390367.1 4028850..4031066(-) (comA) [Pseudomonas syringae CC1557]
ATGCGCACAGGGATGATCGCGCTCGCACTGGGGCTTGTTGCCCTGCGTTTTCTGCCTGCGTTGCCGCCTGCCTGGCTGTT
GTTGCTGATGCCGGTACTGGCATTGATGCTGCTGCCGTTTCGCACTTATCCATTGGCGTTGTTTCTGCTCGGTTTCACTT
GGGCCTGCATTTCAGCGCAGTGGGCGCTGAATGACCGTCTGCCGTCCCGGCTGGACGGGCGGACGCTGTGGGTACAGGGC
CAAATAGTCGGTTTGCCGAGTGTTGCCGAGGGCGTGGTGCGTTTCGAGCTGGAGGACGCCAGCTCACGACGGTCGAAACT
GCCTGCGCGCATTCGCCTGGCCTGGTACGTCGGCCCCGAGATACGTAGCGGCGAGCGCTGGCGTCTGGCGGTCAAACTCA
AGCGTCCGGGCGGACTGGTCAATCCGGATGCCTTCGATTATCAGGCCTGGCTGCTGGCCCAGCGTATCGGCGCTACCGGC
ACCGTGGCAGACGGTCAGCGGCTGGCCCCAGCGCGCGGTGCCTGGCGCGATGGCATTCGTCAGCGGCTGTTGGCCGTCGA
TGCGCAGGGCAGAGAAGGTGGTCTGGCTGCCTTGGTGCTGGGCGATGGCTCTGGTTTGTCGCGCACCGACTGGCAAGTGC
TGCAAGACACCGGCACGGTGCATCTGCTGGTGATTTCCGGTCAGCACATCGGCCTGCTGGCCGGGGTGGTTTACGCGCTG
GTGGCAGGTTTGGCACGTTGGGGGCTGTGGCCACGCGCTTTGCCATGGTTACCCTGCGCGTGTGGGTTGGCGTTTGCTGC
GGCGTTGGGGTACGGGTTGCTGGCTGGTTTCGACGTGCCGGTACGGCGTGCCTGTGTGATGGTCGCCATGGTGCTGCTCT
GGCGTTTACGCTTTCGGCATCTGGGTGTGGTCTGGCCGTTGCTGCTGTCATTCAACACGGTGCTGATCTTTGAGCCACTG
GTGACATTGCAACCGGGTTTCTGGCTGTCCTTTACGGCGGTCGGCATTCTGGTTCTGATTTTCAGCGGCCGGCTGGGTGC
CTGGAGCGGGTGGCAAAGCTGGACCCGTGCGCAATGGCTGATCGCCGTAGGCCTGCTGCCGATTCTGTTGGCGCTGAACT
TGCCGATCAGCCTCAGTGGCCCGTTTGCCAACCTTATTGCTGTTCCGTGGGTCAGCGTGATCGTCCTGCCGCCTGCACTG
ATCGGTACCTTGCTGCTGCCCATCCCAGTGTTGGGTGAAGGTCTATTGTGGCTGGCCGGAGGCGCGCTGGAATGGCTGTT
CGTGTTCCTCGCCCTGGTCGCCGGAGCGCTGCCGGCCTGGTTACCCAGCGCCGTGCCAGTCTGGGCATGGGGCTTGAGTC
TTTTCGGGGCCTTGCTGTTGTTGCTGCCCAAGGGCGTGCCGATGCGTCCGTTGGGCTGGCCCTTGCTGTTGCTGTGCGTG
TTCCCGCCGCTAGAATCGGTGCCGACGGGGCGGGTCGACGTACTGCAACTGGATGTGGGTCAAGGACTGGCGATTCTCCT
GCGTACCCGTCATCACACGCTGTTGTACGACGCCGGCCCGCGTTTCGGTGAGTTCGACATCGGTGAGCGGGTGGTCGTAC
CGGCCATTCGCAAGACCGGTGTTCGTCATCTTGATCTGATGCTGATCAGCCACGCCGACGCTGATCATGCCGGTGGTGCC
CGGGCGGTTCATCAGGCATTTCCCGTGACCAGGGTGCTGGGCGGTGAACTGGCCAGGCTCGCCCCGCAACTTGATGCAAG
GCTGTGCGAGAGCGGCGAGCGCTGGGAGTGGGATGGCGTGATATTCACCACATGGCGCTGGGAGCAGGCTCCCGATGGTA
ATGCGGCCTCCTGCATCCTCAGCGTCGATGCCGGTGGCGAGCGTCTGTTGCTGACCGGCGACATCGATGTGCATGCCGAG
CGTGCGGCCATCGACAGCGGGTTCGACCTGCGCGCCCACTGGTTGCAGGCGCCACATCACGGCAGCCGGTCCTCGTCCTC
GAAACCCTTTCTTCAGGCTGTAGCGCCCGTCGGCGTAGTGATTTCCCGAGGGCGCAACAATGCCTTCGGGCATCCGCACC
CTTCGGTCATGACGCGTTATCGATGGTTGGGCATATCGAGTTATGACAGCGCCGAGCTGGGCGCCATTCATCTGCAACTG
GGTGCATTCGGCTCGCCCCGGGCAGAACGTGCGCAGCGGCGGTTCTGGCGCGATTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-680)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W0MXU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

64.106

97.019

0.622
  comA Ralstonia pseudosolanacearum GMI1000

34.126

100

0.389

Multiple sequence alignment