Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   N018_RS17720 Genome accession   NZ_CP007014
Coordinates   4028092..4028769 (-) Length   225 a.a.
NCBI ID   WP_024645714.1    Uniprot ID   W0MTX5
Organism   Pseudomonas syringae CC1557     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4023092..4033769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N018_RS17695 (N018_18095) murB 4024651..4025670 (-) 1020 WP_024645711.1 UDP-N-acetylmuramate dehydrogenase -
  N018_RS17700 (N018_18100) kdsB 4025705..4026469 (-) 765 WP_025390364.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N018_RS17705 (N018_18105) - 4026466..4026651 (-) 186 WP_025390365.1 Trm112 family protein -
  N018_RS17710 (N018_18110) lpxK 4026669..4027664 (-) 996 WP_025390366.1 tetraacyldisaccharide 4'-kinase -
  N018_RS17715 (N018_18115) - 4027664..4028095 (-) 432 WP_007253407.1 ExbD/TolR family protein -
  N018_RS17720 (N018_18120) exbB 4028092..4028769 (-) 678 WP_024645714.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N018_RS17725 (N018_18125) comA 4028850..4031066 (-) 2217 WP_025390367.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N018_RS17730 (N018_18130) - 4031203..4031991 (-) 789 WP_025390368.1 ABC transporter permease -
  N018_RS17735 (N018_18135) - 4031988..4032920 (-) 933 WP_024671866.1 ABC transporter ATP-binding protein -
  N018_RS17740 (N018_18140) - 4033108..4033731 (-) 624 WP_025390369.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24244.52 Da        Isoelectric Point: 8.5280

>NTDB_id=115721 N018_RS17720 WP_024645714.1 4028092..4028769(-) (exbB) [Pseudomonas syringae CC1557]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRIAPPHLLGQAWQWIQEKKLDSEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIEIFGSFNSTGATANAGVLASGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKVDLKSLARAGGSKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=115721 N018_RS17720 WP_024645714.1 4028092..4028769(-) (exbB) [Pseudomonas syringae CC1557]
GTGTGGGAACTGGTCAAGTCTGGCGGCTGGATGATGCTGCCGATCATTTTGAGTTCCATTGCCGCTGCCGGCATTATCAT
CGAGCGTCTGTGGACACTGCGTGCCAGCCGTATCGCGCCGCCGCATCTGTTGGGACAGGCCTGGCAGTGGATTCAGGAAA
AAAAGCTCGATAGCGAAAAGCTCAAGCAACTGCGTGCTGACTCGCCGCTGGGTGAAATCCTCGCTGCAGGTCTGGCCAAC
TCCAGGCATGGTCGCGAGATCATGAAAGAATGCATCGAAGAAGCCGCGGCCAGGGTTATTCATGATCTGGAACGCTACCT
GAGCGCGCTGGGCTCGATTGCAGCAATGGCACCCCTGCTTGGTCTGCTCGGTACAGTATTGGGCATGATCGAAATTTTCG
GTTCGTTCAACAGTACCGGCGCGACGGCCAATGCCGGTGTGCTGGCAAGCGGTATTTCCAAGGCGCTGATCTGTACGGCA
TCGGGTCTTATCGTCGCGATTCCGGCGATCTTCTTTCATCGCTTTCTGCAGAGCCGTGTCGACGAGCTGGTGGTCGGCAT
GGAGCAGCAGGCCATTCGTCTGGTTGAAGTCGTGCAGGGCGACCGTGATGTCGATCTGATTGACGCCAAGGTTGATCTCA
AATCGCTGGCCAGGGCGGGCGGGAGCAAGAAAAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W0MTX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.095

93.333

0.729

Multiple sequence alignment