Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | KJP64_RS12245 | Genome accession | NZ_OX419565 |
| Coordinates | 2394675..2395010 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus subtilis isolate NRS6145 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2389675..2400010
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KJP64_RS12225 (NRS6145_12090) | gcvT | 2390267..2391355 (-) | 1089 | WP_213379484.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| KJP64_RS12230 (NRS6145_12095) | yqhH | 2391797..2393470 (+) | 1674 | WP_213379486.1 | SNF2-related protein | - |
| KJP64_RS12235 (NRS6145_12100) | yqhG | 2393491..2394285 (+) | 795 | WP_003230200.1 | YqhG family protein | - |
| KJP64_RS12240 (NRS6145_12105) | sinI | 2394468..2394641 (+) | 174 | WP_003230187.1 | anti-repressor SinI family protein | Regulator |
| KJP64_RS12245 (NRS6145_12110) | sinR | 2394675..2395010 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| KJP64_RS12250 (NRS6145_12115) | tasA | 2395103..2395888 (-) | 786 | WP_004398632.1 | biofilm matrix protein TasA | - |
| KJP64_RS12255 (NRS6145_12120) | sipW | 2395952..2396524 (-) | 573 | WP_003246088.1 | signal peptidase I | - |
| KJP64_RS12260 (NRS6145_12125) | tapA | 2396508..2397269 (-) | 762 | WP_015251716.1 | amyloid fiber anchoring/assembly protein TapA | - |
| KJP64_RS12265 (NRS6145_12130) | yqzG | 2397541..2397867 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| KJP64_RS12270 (NRS6145_12135) | spoIIT | 2397909..2398088 (-) | 180 | WP_003230176.1 | YqzE family protein | - |
| KJP64_RS12275 (NRS6145_12140) | comGG | 2398159..2398533 (-) | 375 | WP_015251714.1 | ComG operon protein ComGG | Machinery gene |
| KJP64_RS12280 | comGF | 2398534..2398917 (-) | 384 | WP_015251713.1 | ComG operon protein ComGF | Machinery gene |
| KJP64_RS12285 (NRS6145_12150) | comGE | 2398943..2399290 (-) | 348 | WP_003230165.1 | ComG operon protein 5 | Machinery gene |
| KJP64_RS12290 (NRS6145_12155) | comGD | 2399274..2399705 (-) | 432 | WP_029726720.1 | comG operon protein ComGD | Machinery gene |
| KJP64_RS12295 (NRS6145_12160) | comGC | 2399695..2399991 (-) | 297 | WP_029726719.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=1157165 KJP64_RS12245 WP_003226345.1 2394675..2395010(+) (sinR) [Bacillus subtilis isolate NRS6145]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=1157165 KJP64_RS12245 WP_003226345.1 2394675..2395010(+) (sinR) [Bacillus subtilis isolate NRS6145]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |